Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.6e-75 286.2 164 100.0
ATR0580G176 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.8e-39 166.4 169 68.0
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.9e-24 115.2 172 40.1
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.1e-22 109.8 186 38.7
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.7e-22 109.4 186 38.2
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.9e-21 105.5 176 37.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.1e-20 104.0 194 36.6
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.5e-20 102.8 177 37.3
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.6e-19 100.1 174 37.4
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.1e-19 99.8 203 35.0
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 3.6e-19 99.0 169 37.3
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 3.6e-19 99.0 169 37.3
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.7e-19 98.6 179 35.2
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 4.7e-19 98.6 191 34.0
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 8.1e-19 97.8 203 33.5
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.1e-18 97.4 180 35.6
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.1e-18 97.4 173 36.4
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.4e-18 97.1 177 36.2
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.4e-18 97.1 186 34.9
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-18 96.7 179 33.5
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.8e-18 96.7 190 34.7
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.4e-18 96.3 179 41.3
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 4.0e-18 95.5 168 35.7
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 4.0e-18 95.5 168 35.7
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.2e-18 95.1 180 41.1
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 6.8e-18 94.7 178 35.4
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 6.8e-18 94.7 198 33.8
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 8.9e-18 94.4 189 34.9
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 8.9e-18 94.4 204 34.3
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.9e-18 94.4 204 34.3
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 8.9e-18 94.4 195 33.8
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.5e-17 93.6 171 36.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.6e-17 92.8 173 37.0
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 2.6e-17 92.8 190 32.1
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 3.4e-17 92.4 170 36.5
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.4e-17 92.4 204 33.8
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.4e-17 92.4 189 32.8
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 3.4e-17 92.4 172 35.5
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 4.4e-17 92.0 180 37.8
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.4e-17 92.0 181 37.6
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 7.6e-17 91.3 173 36.4
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 9.9e-17 90.9 171 35.1
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 9.9e-17 90.9 188 37.2
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.3e-16 90.5 168 33.9
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-16 90.5 193 34.2
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.3e-16 90.5 189 30.7
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.7e-16 90.1 175 34.9
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 2.2e-16 89.7 171 36.3
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 2.2e-16 89.7 171 36.3
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.2e-16 89.7 171 36.3
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.2e-16 89.7 193 33.7
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.2e-16 89.7 193 33.7
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 3.8e-16 89.0 172 33.7
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 3.8e-16 89.0 185 33.0
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 4.9e-16 88.6 186 31.7
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.9e-16 88.6 176 34.7
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.9e-16 88.6 193 31.6
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.9e-16 88.6 186 38.2
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 6.4e-16 88.2 171 35.7
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.4e-16 88.2 188 37.8
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 8.4e-16 87.8 178 47.8
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 8.4e-16 87.8 183 33.9
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 8.4e-16 87.8 186 33.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.1e-15 87.4 179 34.1
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.4e-15 87.0 162 36.4
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.9e-15 86.7 181 35.9
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.9e-15 86.7 169 36.7
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.4e-15 86.3 161 36.0
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-15 86.3 168 33.9
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.2e-15 85.9 179 34.1
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 3.2e-15 85.9 175 35.4
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 4.2e-15 85.5 184 38.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 5.4e-15 85.1 184 40.2
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.4e-15 85.1 172 33.1
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 7.1e-15 84.7 181 34.3
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 7.1e-15 84.7 185 31.9
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.1e-15 84.7 189 32.8
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 7.1e-15 84.7 171 32.7
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 9.2e-15 84.3 176 35.2
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 9.2e-15 84.3 172 36.6
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 1.2e-14 84.0 201 41.3
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-14 84.0 178 33.7
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-14 84.0 181 32.6
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.2e-14 84.0 174 30.5
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.6e-14 83.6 185 31.4
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.6e-14 83.6 188 31.9
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.6e-14 83.6 171 39.8
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.1e-14 83.2 172 33.7
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.5e-14 82.4 169 32.5
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.5e-14 82.4 186 32.3
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 4.6e-14 82.0 176 34.1
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 4.6e-14 82.0 187 31.6
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 7.8e-14 81.3 174 30.5
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.0e-13 80.9 174 34.5
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.0e-13 80.9 182 30.8
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.7e-13 80.1 186 32.8
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 2.3e-13 79.7 178 31.5
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 3.9e-13 79.0 169 32.5
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 3.9e-13 79.0 169 32.5
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 3.9e-13 79.0 169 32.5
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 3.9e-13 79.0 169 32.5
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.9e-13 79.0 175 32.0
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.9e-13 79.0 171 36.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 5.1e-13 78.6 181 36.5
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 6.6e-13 78.2 171 34.5
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 8.7e-13 77.8 169 32.5
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 8.7e-13 77.8 182 30.8
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 8.7e-13 77.8 170 32.4
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 1.1e-12 77.4 177 36.2
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.1e-12 77.4 182 34.6
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.5e-12 77.0 170 30.0
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.5e-12 77.0 188 33.5
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.9e-12 76.6 217 28.6
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 2.5e-12 76.3 178 32.6
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-12 76.3 175 33.7
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 2.5e-12 76.3 161 32.9
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 3.3e-12 75.9 173 31.8
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 5.6e-12 75.1 186 42.5
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 5.6e-12 75.1 165 31.5
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.6e-12 74.3 168 32.1
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.2e-11 73.9 158 33.5
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-11 73.6 170 32.4
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.8e-11 72.8 165 33.9
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 4.7e-11 72.0 170 34.7
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.7e-11 72.0 190 30.5
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 6.2e-11 71.6 170 34.7
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.1e-10 70.9 158 33.5
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.1e-10 70.9 168 32.1
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 2.4e-10 69.7 161 31.1
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 4.0e-10 68.9 179 29.1
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 6.9e-10 68.2 173 27.7
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 9.0e-10 67.8 164 30.5
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.2e-09 67.4 165 41.2
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.5e-09 67.0 165 37.6
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.5e-09 67.0 208 28.4
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 2.0e-09 66.6 165 28.5
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.0e-09 66.6 164 31.1
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.6e-09 66.2 162 30.2
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 4.4e-09 65.5 169 39.1
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 4.4e-09 65.5 203 38.9
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 9.9e-09 64.3 163 30.1
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 9.9e-09 64.3 181 27.6
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.3e-08 63.9 100 36.0
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.3e-08 63.9 205 25.9
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.9e-08 62.8 195 27.7
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 6.4e-08 61.6 152 29.6
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-07 60.5 114 34.2
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.9e-07 60.1 203 32.5
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.4e-07 59.7 100 36.0
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.2e-07 59.3 167 31.1
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 4.2e-07 58.9 166 30.7
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.6e-06 57.0 154 38.3
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.7e-06 56.2 212 36.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 3.5e-06 55.8 171 37.4
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 4.6e-06 55.5 151 26.5
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 6.0e-06 55.1 108 35.2
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.0e-06 55.1 169 27.2


User provided reference genes

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