Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G123 Amborella trichopoda HOM05D000498 ORTHO05D000354 3.0e-27 124.4 61 100.0
Migut.D00190 Erythranthe guttata HOM05D000498 ORTHO05D000354 3.3e-10 67.8 51 62.7
Eucgr.H01174 Eucalyptus grandis HOM05D000498 ORTHO05D000354 5.7e-10 67.0 51 60.8
Eucgr.H01176 Eucalyptus grandis HOM05D000498 ORTHO05D000354 5.7e-10 67.0 51 60.8
Peaxi162Scf00067g02427 Petunia axillaris HOM05D000498 ORTHO05D000354 1.7e-09 65.5 53 60.4
Eucgr.H01169 Eucalyptus grandis HOM05D000498 ORTHO05D000354 2.8e-09 64.7 51 60.8
Nitab4.5_0011583g0010 Nicotiana tabacum HOM05D000498 ORTHO05D000354 3.7e-09 64.3 51 60.8
SalBow3G4098 Salvia bowleyana HOM05D000498 ORTHO05D000354 6.3e-09 63.5 51 60.8
CANSAT25G2187 Cannabis sativa HOM05D000498 ORTHO05D000354 8.2e-09 63.2 49 61.2
CiPaw.07G104300 Carya illinoinensis HOM05D000498 ORTHO05D000354 8.2e-09 63.2 50 60.0
Lj1C33T10 Lonicera japonica HOM05D000498 ORTHO05D000354 8.2e-09 63.2 50 58.0
CiPaw.07G105300 Carya illinoinensis HOM05D000498 ORTHO05D000354 1.1e-08 62.8 50 62.0
Gohir.D12G010200 Gossypium hirsutum HOM05D000498 ORTHO05D000354 1.1e-08 62.8 50 60.0
Gorai.008G010200 Gossypium raimondii HOM05D000498 ORTHO05D000354 1.1e-08 62.8 50 60.0
Sp4g29660 Schrenkiella parvula HOM05D000498 ORTHO05D000354 1.4e-08 62.4 50 62.0
QL12p026879 Quercus lobata HOM05D000498 ORTHO05D000354 1.8e-08 62.0 50 64.0
ATR0706G078 Amborella trichopoda HOM05D000498 ORTHO05D000354 2.4e-08 61.6 32 90.6
Gohir.A12G010100 Gossypium hirsutum HOM05D000498 ORTHO05D000354 2.4e-08 61.6 50 58.0
Nitab4.5_0005474g0060 Nicotiana tabacum HOM05D000498 ORTHO05D000354 2.4e-08 61.6 51 58.8
CiPaw.07G105200 Carya illinoinensis HOM05D000498 ORTHO05D000354 3.1e-08 61.2 49 61.2
Thhalv10001585m.g Eutrema salsugineum HOM05D000498 ORTHO05D000354 3.1e-08 61.2 50 60.0
MSTRG.18173 Avicennia marina HOM05D000498 ORTHO05D000354 4.1e-08 60.8 51 58.8
BcaB01g03161 Brassica carinata HOM05D000498 ORTHO05D000354 4.1e-08 60.8 50 60.0
AUR62033162 Chenopodium quinoa HOM05D000498 ORTHO05D000354 4.1e-08 60.8 51 58.8
CSS0027599 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 5.3e-08 60.5 49 59.2
CiPaw.08G097900 Carya illinoinensis HOM05D000498 ORTHO05D000354 5.3e-08 60.5 50 60.0
Eucgr.L01827 Eucalyptus grandis HOM05D000498 ORTHO05D000354 5.3e-08 60.5 51 56.9
Hma1.2p1_0209F.1_g088720 Hydrangea macrophylla HOM05D000498 ORTHO05D000354 5.3e-08 60.5 50 60.0
MD03G1282700 Malus domestica HOM05D000498 ORTHO05D000354 5.3e-08 60.5 50 54.0
GSVIVG01010940001 Vitis vinifera HOM05D000498 ORTHO05D000354 5.3e-08 60.5 51 62.7
GSVIVG01010942001 Vitis vinifera HOM05D000498 ORTHO05D000354 5.3e-08 60.5 51 62.7
BcaC02g12546 Brassica carinata HOM05D000498 ORTHO05D000354 6.9e-08 60.1 49 59.2
A05p00240 Brassica napus HOM05D000498 ORTHO05D000354 6.9e-08 60.1 49 59.2
C04p00150 Brassica napus HOM05D000498 ORTHO05D000354 6.9e-08 60.1 49 59.2
BolC4t21662H Brassica oleracea HOM05D000498 ORTHO05D000354 6.9e-08 60.1 49 59.2
BraA05t19020Z Brassica rapa HOM05D000498 ORTHO05D000354 6.9e-08 60.1 49 59.2
Haze_04878 Corylus avellana HOM05D000498 ORTHO05D000354 6.9e-08 60.1 51 56.9
RcHm_v2.0_Chr6g0293321 Rosa chinensis HOM05D000498 ORTHO05D000354 6.9e-08 60.1 49 57.1
EL10As6g23643 Beta vulgaris HOM05D000498 ORTHO05D000354 9.1e-08 59.7 51 54.9
A03p26040 Brassica napus HOM05D000498 ORTHO05D000354 9.1e-08 59.7 50 58.0
BraA03t11819Z Brassica rapa HOM05D000498 ORTHO05D000354 9.1e-08 59.7 50 58.0
Solyc06g009020.2 Solanum lycopersicum HOM05D000498 ORTHO05D000354 9.1e-08 59.7 51 54.9
Sopen06g003820 Solanum pennellii HOM05D000498 ORTHO05D000354 9.1e-08 59.7 51 54.9
arahy.Tifrunner.gnm1.ann1.06EJ88 Arachis hypogaea HOM05D000498 ORTHO05D000354 1.2e-07 59.3 50 56.0
BcaC01g05024 Brassica carinata HOM05D000498 ORTHO05D000354 1.2e-07 59.3 50 58.0
C03p31030 Brassica napus HOM05D000498 ORTHO05D000354 1.2e-07 59.3 50 58.0
BolC3t15453H Brassica oleracea HOM05D000498 ORTHO05D000354 1.2e-07 59.3 50 58.0
CSS0003128 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 1.2e-07 59.3 49 57.1
Eucgr.H01166 Eucalyptus grandis HOM05D000498 ORTHO05D000354 1.2e-07 59.3 51 51.0
Eucgr.H01172 Eucalyptus grandis HOM05D000498 ORTHO05D000354 1.2e-07 59.3 51 54.9
PGR090G0001 Punica granatum HOM05D000498 ORTHO05D000354 1.2e-07 59.3 49 57.1
Actinidia24326 Actinidia chinensis HOM05D000498 ORTHO05D000354 1.5e-07 58.9 50 54.0
Aqoxy2G03014 Aquilegia oxysepala HOM05D000498 ORTHO05D000354 1.5e-07 58.9 49 53.1
FvH4_2g25210 Fragaria vesca HOM05D000498 ORTHO05D000354 1.5e-07 58.9 49 55.1
FAN24G0080 Fragaria x ananassa HOM05D000498 ORTHO05D000354 1.5e-07 58.9 49 55.1
Nn3g21415 Nelumbo nucifera HOM05D000498 ORTHO05D000354 1.5e-07 58.9 51 54.9
EL10Ac3g07065 Beta vulgaris HOM05D000498 ORTHO05D000354 2.0e-07 58.5 51 58.8
Cfa005968 Carpinus fangiana HOM05D000498 ORTHO05D000354 2.0e-07 58.5 45 66.7
Cfa005969 Carpinus fangiana HOM05D000498 ORTHO05D000354 2.0e-07 58.5 50 60.0
AUR62008609 Chenopodium quinoa HOM05D000498 ORTHO05D000354 2.0e-07 58.5 51 54.9
Sc05g0004280 Simmondsia chinensis HOM05D000498 ORTHO05D000354 2.0e-07 58.5 49 55.1
AT2G47730 Arabidopsis thaliana HOM05D000498 ORTHO05D000354 2.6e-07 58.2 50 58.0
Cfa005964 Carpinus fangiana HOM05D000498 ORTHO05D000354 2.6e-07 58.2 49 59.2
Duzib211G0007 Durio zibethinus HOM05D000498 ORTHO05D000354 2.6e-07 58.2 50 54.0
FAN20G1051 Fragaria x ananassa HOM05D000498 ORTHO05D000354 2.6e-07 58.2 49 55.1
PGR119G1473 Punica granatum HOM05D000498 ORTHO05D000354 2.6e-07 58.2 49 57.1
QL11p008714 Quercus lobata HOM05D000498 ORTHO05D000354 2.6e-07 58.2 51 54.9
Atru.chr4.2816 Acer truncatum HOM05D000498 ORTHO05D000354 3.4e-07 57.8 51 52.9
Actinidia32235 Actinidia chinensis HOM05D000498 ORTHO05D000354 3.4e-07 57.8 49 55.1
arahy.Tifrunner.gnm1.ann1.QHGU6Q Arachis hypogaea HOM05D000498 ORTHO05D000354 3.4e-07 57.8 49 55.1
Ciclev10022212m.g Citrus clementina HOM05D000498 ORTHO05D000354 3.4e-07 57.8 49 57.1
Haze_04881 Corylus avellana HOM05D000498 ORTHO05D000354 3.4e-07 57.8 47 61.7
Nitab4.5_0012359g0020 Nicotiana tabacum HOM05D000498 ORTHO05D000354 3.4e-07 57.8 59 47.5
QL12p026960 Quercus lobata HOM05D000498 ORTHO05D000354 3.4e-07 57.8 50 58.0
Atru.chr5.1215 Acer truncatum HOM05D000498 ORTHO05D000354 4.5e-07 57.4 51 56.9
Ah.15g093340 Amaranthus hybridus HOM05D000498 ORTHO05D000354 4.5e-07 57.4 51 54.9
Carub.0004s3045 Capsella rubella HOM05D000498 ORTHO05D000354 4.5e-07 57.4 50 54.0
Ciclev10024356m.g Citrus clementina HOM05D000498 ORTHO05D000354 4.5e-07 57.4 49 57.1
Eucgr.H01175 Eucalyptus grandis HOM05D000498 ORTHO05D000354 4.5e-07 57.4 50 56.0
Medtr1g088845 Medicago truncatula HOM05D000498 ORTHO05D000354 4.5e-07 57.4 49 55.1
Peaxi162Scf00399g00920 Petunia axillaris HOM05D000498 ORTHO05D000354 4.5e-07 57.4 51 54.9
PGR090G0003 Punica granatum HOM05D000498 ORTHO05D000354 4.5e-07 57.4 49 53.1
PGR119G0883 Punica granatum HOM05D000498 ORTHO05D000354 4.5e-07 57.4 49 53.1
QL12p026894 Quercus lobata HOM05D000498 ORTHO05D000354 4.5e-07 57.4 50 56.0
Sabra02G0151500 Salix brachista HOM05D000498 ORTHO05D000354 4.5e-07 57.4 51 58.8
Sabra02G0152100 Salix brachista HOM05D000498 ORTHO05D000354 4.5e-07 57.4 51 58.8
Hund05409 Selenicereus undatus HOM05D000498 ORTHO05D000105 4.5e-07 57.4 51 52.9
Solyc09g074850.4 Solanum lycopersicum HOM05D000498 ORTHO05D000354 4.5e-07 57.4 51 56.9
PGSC0003DMG402011367 Solanum tuberosum HOM05D000498 ORTHO05D000354 4.5e-07 57.4 51 56.9
GSVIVG01027958001 Vitis vinifera HOM05D000498 ORTHO05D000354 4.5e-07 57.4 49 53.1
CARHR143110 Cardamine hirsuta HOM05D000498 ORTHO05D000354 5.9e-07 57.0 49 57.1
ECA248G0649 Erigeron canadensis HOM05D000498 ORTHO05D000354 5.9e-07 57.0 51 54.9
MD06G1012200 Malus domestica HOM05D000498 ORTHO05D000354 5.9e-07 57.0 51 56.9
Potri.002G207672 Populus trichocarpa HOM05D000498 ORTHO05D000354 5.9e-07 57.0 51 58.8
Hund05408 Selenicereus undatus HOM05D000498 ORTHO05D000354 5.9e-07 57.0 51 52.9
PGSC0003DMG400014627 Solanum tuberosum HOM05D000498 ORTHO05D000354 5.9e-07 57.0 51 51.0
BcaB02g08750 Brassica carinata HOM05D000498 ORTHO05D000354 7.7e-07 56.6 49 53.1
Cfa005962 Carpinus fangiana HOM05D000498 ORTHO05D000354 7.7e-07 56.6 49 57.1
Migut.D00191 Erythranthe guttata HOM05D000498 ORTHO05D000354 7.7e-07 56.6 51 52.9
QL12p026939 Quercus lobata HOM05D000498 ORTHO05D000354 7.7e-07 56.6 50 54.0
arahy.Tifrunner.gnm1.ann1.28J7Y2 Arachis hypogaea HOM05D000498 ORTHO05D000354 1.0e-06 56.2 50 52.0
arahy.Tifrunner.gnm1.ann1.W7ZTHA Arachis hypogaea HOM05D000498 ORTHO05D000354 1.0e-06 56.2 50 52.0
EL10Ac7g17486 Beta vulgaris HOM05D000498 ORTHO05D000354 1.0e-06 56.2 51 54.9
Duzib138G1769 Durio zibethinus HOM05D000498 ORTHO05D000354 1.0e-06 56.2 49 55.1
HanXRQChr01g0001721 Helianthus annuus HOM05D000498 ORTHO05D000354 1.0e-06 56.2 51 56.9
Lj1A33T89 Lonicera japonica HOM05D000498 ORTHO05D000354 1.0e-06 56.2 49 55.1
Lj5g0005601 Lotus japonicus HOM05D000498 ORTHO05D000354 1.0e-06 56.2 47 57.4
Peaxi162Scf00399g00097 Petunia axillaris HOM05D000498 ORTHO05D000354 1.0e-06 56.2 51 52.9
TPR.G33991 Trifolium pratense HOM05D000498 ORTHO05D000354 1.0e-06 56.2 49 51.0
Aa31LG1G29050 Aethionema arabicum HOM05D000498 ORTHO05D000354 1.3e-06 55.8 48 56.2
AL4G47300 Arabidopsis lyrata HOM05D000498 ORTHO05D000354 1.3e-06 55.8 49 57.1
COL.COLO4_23396 Corchorus olitorius HOM05D000498 ORTHO05D000354 1.3e-06 55.8 51 58.8
Lj5g0013739 Lotus japonicus HOM05D000498 ORTHO05D000354 1.3e-06 55.8 49 55.1
Prupe.8G256900 Prunus persica HOM05D000498 ORTHO05D000354 1.3e-06 55.8 49 53.1
QL12p026754 Quercus lobata HOM05D000498 ORTHO05D000354 1.3e-06 55.8 51 56.9
Sabra02G0152600 Salix brachista HOM05D000498 ORTHO05D000354 1.3e-06 55.8 49 49.0
Thecc.01G295600 Theobroma cacao HOM05D000498 ORTHO05D000354 1.3e-06 55.8 49 55.1
TWI59G1379 Tripterygium wilfordii HOM05D000498 ORTHO05D000354 1.3e-06 55.8 50 54.0
Atru.chr5.1205 Acer truncatum HOM05D000498 ORTHO05D000354 1.7e-06 55.5 49 57.1
AUR62026020 Chenopodium quinoa HOM05D000498 ORTHO05D000354 1.7e-06 55.5 51 54.9
Cc01_g20580 Coffea canephora HOM05D000498 ORTHO05D000354 1.7e-06 55.5 51 52.9
Dinv19724 Davidia involucrata HOM05D000498 ORTHO05D000354 1.7e-06 55.5 49 51.0
Dinv33028 Davidia involucrata HOM05D000498 ORTHO05D000354 1.7e-06 55.5 49 53.1
MBI19_g24334_MAGBIO Magnolia biondii HOM05D000498 ORTHO05D000354 1.7e-06 55.5 56 48.2
RcHm_v2.0_Chr7g0215041 Rosa chinensis HOM05D000498 ORTHO05D000354 1.7e-06 55.5 51 52.9
Sabra02G0152400 Salix brachista HOM05D000498 ORTHO05D000354 1.7e-06 55.5 51 56.9
EL10Ac3g07066 Beta vulgaris HOM05D000498 ORTHO05D000354 2.2e-06 55.1 51 56.9
CSS0049526 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 2.2e-06 55.1 48 56.2
CsaV3_7G029040 Cucumis sativus L. HOM05D000498 ORTHO05D000354 2.2e-06 55.1 50 54.0
FAN08G2360 Fragaria x ananassa HOM05D000498 ORTHO05D000354 2.2e-06 55.1 51 49.0
Lj1A33T90 Lonicera japonica HOM05D000498 ORTHO05D000354 2.2e-06 55.1 49 53.1
Manes.05G064800 Manihot esculenta HOM05D000498 ORTHO05D000354 2.2e-06 55.1 49 53.1
PGR119G2171 Punica granatum HOM05D000498 ORTHO05D000354 2.2e-06 55.1 49 55.1
QL12p026899 Quercus lobata HOM05D000498 ORTHO05D000354 2.2e-06 55.1 45 64.4
QL12p026955 Quercus lobata HOM05D000498 ORTHO05D000354 2.2e-06 55.1 45 64.4
Rhsim13G0013600 Rhododendron simsii HOM05D000498 ORTHO05D000354 2.2e-06 55.1 49 51.0
Cfa005967 Carpinus fangiana HOM05D000498 ORTHO05D000354 2.9e-06 54.7 49 55.1
COL.COLO4_23394 Corchorus olitorius HOM05D000498 ORTHO05D000354 2.9e-06 54.7 52 57.7
Eucgr.H01173 Eucalyptus grandis HOM05D000498 ORTHO05D000354 2.9e-06 54.7 51 52.9
FvH4_5g24660 Fragaria vesca HOM05D000498 ORTHO05D000354 2.9e-06 54.7 51 49.0
FAN13G2778 Fragaria x ananassa HOM05D000498 ORTHO05D000354 2.9e-06 54.7 51 49.0
FAN18G2595 Fragaria x ananassa HOM05D000498 ORTHO05D000354 2.9e-06 54.7 51 49.0
Gohir.A08G117500 Gossypium hirsutum HOM05D000498 ORTHO05D000354 2.9e-06 54.7 50 54.0
Gorai.004G141900 Gossypium raimondii HOM05D000498 ORTHO05D000354 2.9e-06 54.7 50 54.0
Nn3g21416 Nelumbo nucifera HOM05D000498 ORTHO05D000354 2.9e-06 54.7 48 56.2
Potri.002G207093 Populus trichocarpa HOM05D000498 ORTHO05D000354 2.9e-06 54.7 49 53.1
Prupe.5G014900 Prunus persica HOM05D000498 ORTHO05D000354 2.9e-06 54.7 51 56.9
QL06p008678 Quercus lobata HOM05D000498 ORTHO05D000354 2.9e-06 54.7 51 51.0
RcHm_v2.0_Chr6g0293341 Rosa chinensis HOM05D000498 ORTHO05D000354 2.9e-06 54.7 49 53.1
Sc17g0003250 Simmondsia chinensis HOM05D000498 ORTHO05D000354 2.9e-06 54.7 49 51.0
Sc24g0003860 Simmondsia chinensis HOM05D000498 ORTHO05D000354 2.9e-06 54.7 49 55.1
Cpa.g.sc9.201 Carica papaya HOM05D000498 ORTHO05D000354 3.8e-06 54.3 49 49.0
ClCG09G006130 Citrullus lanatus HOM05D000498 ORTHO05D000354 3.8e-06 54.3 50 52.0
COL.COLO4_02840 Corchorus olitorius HOM05D000498 ORTHO05D000354 3.8e-06 54.3 51 56.9
Duzib138G1686 Durio zibethinus HOM05D000498 ORTHO05D000354 3.8e-06 54.3 51 56.9
HanXRQChr01g0001731 Helianthus annuus HOM05D000498 ORTHO05D000354 3.8e-06 54.3 51 56.9
HanXRQChr04g0118231 Helianthus annuus HOM05D000498 ORTHO05D000354 3.8e-06 54.3 46 56.5
Oeu046697.1 Olea europaea HOM05D000498 ORTHO05D000354 3.8e-06 54.3 51 52.9
PSO541G0972 Papaver somniferum HOM05D000498 ORTHO05D000354 3.8e-06 54.3 49 51.0
PSO675G6672 Papaver somniferum HOM05D000498 ORTHO05D000354 3.8e-06 54.3 49 51.0
Potri.014G132200 Populus trichocarpa HOM05D000498 ORTHO05D000354 3.8e-06 54.3 51 58.8
Sabra14G0098500 Salix brachista HOM05D000498 ORTHO05D000354 3.8e-06 54.3 51 58.8
CSS0044356 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 5.0e-06 53.9 49 53.1
CANSAT25G0290 Cannabis sativa HOM05D000498 ORTHO05D000354 5.0e-06 53.9 50 52.0
Eucgr.H01167 Eucalyptus grandis HOM05D000498 ORTHO05D000354 5.0e-06 53.9 51 51.0
MBI19_g24335_MAGBIO Magnolia biondii HOM05D000498 ORTHO05D000354 5.0e-06 53.9 46 58.7
Os01g0933900 Oryza sativa ssp. japonica HOM05D000498 ORTHO05D000354 5.0e-06 53.9 49 46.9
THA.LOC104801263 Tarenaya hassleriana HOM05D000498 ORTHO05D000354 5.0e-06 53.9 49 53.1
Zm00001eb142220 Zea mays HOM05D000498 ORTHO05D000354 5.0e-06 53.9 49 51.0
EL10Ac7g16600 Beta vulgaris HOM05D000498 ORTHO05D000354 6.5e-06 53.5 51 52.9
CAN.G1006.9 Capsicum annuum HOM05D000498 ORTHO05D000354 6.5e-06 53.5 51 49.0
AUR62008607 Chenopodium quinoa HOM05D000498 ORTHO05D000354 6.5e-06 53.5 51 49.0
MELO3C016033.2 Cucumis melo HOM05D000498 ORTHO05D000354 6.5e-06 53.5 50 52.0
Glyma.02G154400 Glycine max HOM05D000498 ORTHO05D000354 6.5e-06 53.5 49 49.0
Medtr1g088825 Medicago truncatula HOM05D000498 ORTHO05D000354 6.5e-06 53.5 49 51.0
Medtr1g088840 Medicago truncatula HOM05D000498 ORTHO05D000354 6.5e-06 53.5 49 51.0
Psat6g166800 Pisum sativum HOM05D000498 ORTHO05D000354 6.5e-06 53.5 49 51.0
Rhsim13G0013400 Rhododendron simsii HOM05D000498 ORTHO05D000354 6.5e-06 53.5 49 53.1
Sed0024229 Sechium edule HOM05D000498 ORTHO05D000354 6.5e-06 53.5 49 55.1
AUR62008599 Chenopodium quinoa HOM05D000498 ORTHO05D000354 8.5e-06 53.1 51 52.9
AUR62033160 Chenopodium quinoa HOM05D000498 ORTHO05D000354 8.5e-06 53.1 51 49.0
Lsat_1_v5_gn_5_191321 Lactuca sativa HOM05D000498 ORTHO05D000354 8.5e-06 53.1 51 49.0


User provided reference genes

Program Settings