Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 3.8e-182 641.3 318 100.0
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.6e-71 273.9 317 52.4
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.7e-60 236.1 319 47.3
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 4.5e-58 229.2 321 46.4
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.1e-55 220.3 320 46.9
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.1e-51 206.5 277 48.4
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.0e-50 203.8 285 46.7
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.5e-50 203.0 283 45.9
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 5.0e-49 199.1 291 46.7
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 6.5e-49 198.7 286 47.2
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 6.5e-49 198.7 286 47.2
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.1e-48 198.0 277 47.3
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.2e-48 196.4 280 46.4
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 3.2e-48 196.4 271 45.8
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 3.2e-48 196.4 274 46.4
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.2e-48 196.1 280 46.4
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 9.4e-48 194.9 274 48.9
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.6e-47 194.1 276 45.3
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.6e-47 194.1 276 45.3
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.6e-47 194.1 277 44.0
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 4.7e-47 192.6 272 44.5
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 4.7e-47 192.6 240 49.2
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 8.0e-47 191.8 274 46.0
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 8.0e-47 191.8 271 44.6
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.8e-46 190.7 270 44.4
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 5.2e-46 189.1 237 51.1
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 6.7e-46 188.7 272 45.2
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 6.7e-46 188.7 266 44.4
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 2.0e-45 187.2 278 45.3
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.6e-45 186.8 265 44.5
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 3.3e-45 186.4 237 49.8
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 3.3e-45 186.4 292 44.5
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 4.4e-45 186.0 286 44.4
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 5.7e-45 185.7 276 45.3
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.5e-45 185.3 286 44.4
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 7.5e-45 185.3 265 43.8
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 9.7e-45 184.9 259 44.4
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 1.3e-44 184.5 320 39.1
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.3e-44 184.5 274 46.0
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.7e-44 184.1 280 46.1
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.7e-44 184.1 271 43.2
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.2e-44 183.7 293 43.0
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 3.7e-44 183.0 241 48.1
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 4.8e-44 182.6 271 44.6
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 4.8e-44 182.6 233 50.6
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 6.3e-44 182.2 286 44.4
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 8.3e-44 181.8 323 38.7
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 8.3e-44 181.8 290 42.8
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.8e-43 180.6 286 43.7
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.8e-43 180.6 250 48.4
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 2.4e-43 180.3 232 50.0
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 5.3e-43 179.1 231 50.6
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 7.0e-43 178.7 234 50.4
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 1.6e-42 177.6 287 42.9
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.6e-42 177.6 233 49.8
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 2.7e-42 176.8 285 44.2
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 2.7e-42 176.8 277 44.4
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 4.5e-42 176.0 270 46.3
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 4.5e-42 176.0 224 49.1
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.0e-41 174.9 279 42.3
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.3e-41 174.5 239 45.6
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.7e-41 174.1 245 47.8
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 2.2e-41 173.7 305 41.6
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 5.0e-41 172.6 287 43.9
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 6.5e-41 172.2 249 44.6
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 8.5e-41 171.8 271 44.6
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 4.2e-40 169.5 310 40.3
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.2e-39 167.9 263 44.9
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.6e-39 167.5 268 42.5
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 1.0e-38 164.9 310 39.0
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.8e-38 164.1 267 41.9
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.3e-38 163.7 273 42.5
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.0e-38 163.3 271 42.1
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 5.2e-38 162.5 277 42.2
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.0e-37 160.6 250 44.8
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 4.4e-37 159.5 287 42.9
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.1e-35 154.8 268 41.0
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 1.4e-35 154.5 192 52.1
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 1.4e-35 154.5 192 52.1
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 1.4e-35 154.5 192 52.1
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.8e-35 154.1 231 44.2
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 2.4e-35 153.7 262 42.4
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 9.1e-35 151.8 196 49.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 1.2e-34 151.4 252 44.4
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.2e-34 151.4 255 41.6
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 4.5e-34 149.4 202 48.0
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 2.3e-33 147.1 189 49.2
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 2.9e-33 146.7 202 49.0
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 2.9e-33 146.7 206 49.0
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 8.6e-33 145.2 191 51.3
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.1e-32 144.8 288 38.9
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.5e-32 144.4 186 52.2
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.5e-32 144.4 258 42.6
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.9e-32 144.1 273 37.7
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 3.3e-32 143.3 251 41.0
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 5.5e-32 142.5 196 48.5
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 7.2e-32 142.1 236 43.2
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 7.2e-32 142.1 192 47.4
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 9.5e-32 141.7 255 41.2
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 2.1e-31 140.6 243 42.0
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 3.6e-31 139.8 194 48.5
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.8e-30 137.5 233 42.9
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.0e-30 136.3 298 36.2
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.2e-29 134.8 226 43.4
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.1e-27 128.3 415 28.7
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.4e-27 125.9 228 39.5
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 5.4e-27 125.9 232 38.8
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.6e-26 124.4 200 43.0
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 4.5e-26 122.9 211 41.7
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.5e-26 122.9 244 38.1
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 5.9e-26 122.5 206 43.2
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.5e-24 117.1 194 43.3
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 3.3e-24 116.7 218 39.4
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.7e-23 112.8 200 39.5
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 4.7e-23 112.8 306 37.3
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.0e-22 111.7 80 67.5
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.3e-20 104.8 307 33.6
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 2.4e-19 100.5 231 35.1
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.3e-17 94.0 206 35.4
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.5e-16 91.3 182 39.6
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.2e-13 81.6 54 68.5
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 2.6e-13 80.5 66 62.1
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 3.2e-11 73.6 104 44.2
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.0e-10 69.3 157 35.0
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 6.0e-10 69.3 222 32.0
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.3e-09 68.2 51 64.7
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 2.3e-09 67.4 168 33.9
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.1e-09 66.2 129 34.9
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 9.5e-08 62.0 260 28.8


User provided reference genes

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