Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 0.0e+00 1105.1 562 100.0
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 3.8e-233 811.6 562 73.0
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 4.2e-232 808.1 563 73.2
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 1.7e-230 802.7 562 71.2
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.2e-228 794.3 562 71.4
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.2e-226 790.0 562 70.8
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.2e-226 790.0 562 70.8
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 1.7e-225 786.2 563 70.2
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 3.8e-225 785.0 562 69.4
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 3.2e-224 781.9 562 68.9
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 7.1e-224 780.8 563 69.4
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.2e-223 780.0 563 70.2
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 1.6e-223 779.6 561 69.7
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 3.5e-223 778.5 562 69.6
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 1.3e-222 776.5 563 68.9
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 1.1e-221 773.5 627 64.6
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 1.1e-221 773.5 563 69.4
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 2.5e-221 772.3 562 69.0
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 4.3e-221 771.5 562 69.4
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 7.3e-221 770.8 562 69.6
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 7.3e-221 770.8 562 68.5
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 9.6e-221 770.4 601 65.4
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 1.3e-220 770.0 540 71.7
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 2.1e-220 769.2 564 69.7
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 4.8e-220 768.1 562 69.2
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 6.2e-220 767.7 563 70.7
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 1.8e-219 766.1 563 69.1
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.8e-219 766.1 562 68.7
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 3.1e-219 765.4 558 69.2
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 3.1e-219 765.4 562 68.9
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.2e-218 763.5 563 69.1
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 9.9e-218 760.4 562 68.0
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.3e-217 760.0 563 69.3
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 1.3e-217 760.0 562 68.5
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.3e-217 760.0 563 68.9
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.9e-217 758.8 563 67.9
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.1e-216 756.9 543 70.9
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 9.3e-216 753.8 562 68.0
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 4.6e-215 751.5 562 67.8
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 2.3e-214 749.2 562 67.4
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 3.0e-214 748.8 563 67.1
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 3.3e-213 745.3 562 67.6
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 5.6e-213 744.6 576 67.2
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 2.1e-212 742.7 562 66.7
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 1.1e-211 740.3 562 66.0
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 2.4e-211 739.2 562 66.9
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 2.4e-211 739.2 562 66.9
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 2.4e-211 739.2 562 68.0
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 9.0e-211 737.3 563 66.4
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.0e-210 736.1 563 67.0
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 3.4e-210 735.3 563 67.0
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 2.9e-209 732.3 566 66.4
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 6.5e-209 731.1 563 67.1
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 8.4e-209 730.7 566 66.3
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 4.2e-208 728.4 563 67.3
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 4.2e-208 728.4 613 62.5
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.6e-207 726.5 558 66.1
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.0e-206 723.8 561 66.0
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 3.9e-206 721.8 563 66.1
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.1e-205 720.3 562 66.5
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.5e-205 719.9 563 65.7
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 2.5e-205 719.2 562 65.8
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.6e-204 716.5 534 68.4
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 3.7e-204 715.3 561 65.8
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 1.1e-203 713.8 567 65.4
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 5.3e-203 711.4 562 64.1
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 1.2e-199 700.3 548 66.6
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.1e-199 699.5 563 64.5
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 2.7e-199 699.1 516 67.4
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.0e-198 697.2 649 58.1
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 4.8e-196 688.3 562 62.1
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 4.8e-196 688.3 513 66.9
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 4.8e-196 688.3 562 61.7
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 8.2e-196 687.6 577 63.8
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.4e-195 686.8 563 62.2
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.4e-195 686.8 563 62.2
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.2e-194 683.7 562 62.6
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 4.5e-194 681.8 563 61.8
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 7.7e-194 681.0 562 62.1
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.1e-192 677.2 562 61.4
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.9e-192 676.4 512 66.8
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 4.2e-192 675.2 562 61.2
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 2.7e-191 672.5 563 61.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.7e-191 672.5 562 61.2
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 3.0e-190 669.1 533 63.0
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 9.7e-189 664.1 577 60.0
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 5.3e-187 658.3 563 60.6
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 4.5e-186 655.2 562 60.9
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 1.0e-185 654.1 562 60.3
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 4.8e-180 635.2 512 63.1
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 5.5e-176 621.7 569 57.1
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 2.3e-174 616.3 593 57.7
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 4.0e-174 615.5 477 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 1.0e-169 600.9 563 56.1
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.0e-166 589.0 394 74.4
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 8.3e-164 581.3 456 64.5
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 7.7e-162 574.7 434 65.9
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 1.5e-160 570.5 567 52.6
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.1e-139 501.1 555 50.6
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 5.2e-134 482.3 383 65.3
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 3.0e-129 466.5 331 72.2
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 4.6e-122 442.6 357 60.2
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 8.6e-121 438.3 350 66.9
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 4.3e-120 436.0 520 49.2
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 3.8e-116 422.9 307 71.0
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 3.5e-106 389.8 341 59.5
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 6.2e-95 352.4 260 65.4
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 2.8e-87 327.0 545 37.6
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 5.0e-68 263.1 211 65.9
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 4.1e-62 243.4 198 63.1
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.7e-58 229.9 200 61.5
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 8.8e-57 225.7 174 59.2
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 9.1e-54 215.7 142 69.7
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 8.3e-47 192.6 131 71.0
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 2.2e-39 167.9 161 56.5
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-30 139.0 90 67.8
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.1e-27 129.0 157 47.1
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.1e-27 129.0 157 47.1
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 9.5e-27 125.9 180 41.1
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.8e-25 121.7 178 40.4
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-24 119.0 102 61.8
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 9.8e-24 115.9 159 43.4
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 5.4e-22 110.2 130 46.2
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 3.5e-21 107.5 78 69.2
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-20 105.5 76 64.5
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 2.0e-16 91.7 58 70.7
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 7.5e-16 89.7 76 59.2
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 4.3e-11 73.9 88 50.0
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.6e-10 70.9 91 44.0
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 2.6e-08 64.7 159 24.5
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 3.4e-08 64.3 129 27.9
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 4.4e-08 63.9 47 55.3
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 9.9e-08 62.8 161 24.2
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 1.3e-07 62.4 161 24.2
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 1.7e-07 62.0 170 22.9
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 1.7e-07 62.0 281 21.4
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 6.4e-07 60.1 161 24.2


User provided reference genes

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