Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.8e-229 798.5 481 100.0
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 7.8e-155 551.2 494 75.5
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.3e-60 236.5 460 41.3
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 7.3e-60 235.7 464 40.9
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.0e-57 227.6 473 41.2
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 4.4e-57 226.5 462 40.0
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.1e-55 221.9 474 40.7
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.2e-54 218.4 449 39.9
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.2e-54 218.4 412 38.8
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.1e-54 217.6 460 38.3
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.6e-54 216.5 404 40.8
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.3e-53 214.2 480 38.3
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.6e-51 206.8 468 41.0
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.4e-50 204.9 406 38.9
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 4.4e-49 199.9 408 40.7
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.7e-48 196.8 414 40.8
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.0e-45 188.7 406 37.4
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.3e-45 188.3 413 37.3
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 6.6e-45 186.0 446 34.3
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 7.3e-44 182.6 468 36.8
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 9.6e-44 182.2 409 35.7
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.7e-43 179.9 414 35.3
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 8.9e-42 175.6 442 38.2
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.5e-41 174.9 450 35.8
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 5.8e-41 172.9 469 33.0
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 9.9e-41 172.2 463 35.9
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.2e-40 171.0 457 36.3
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.9e-40 170.6 461 38.2
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 8.4e-40 169.1 421 34.4
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.4e-39 168.3 418 33.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.4e-39 167.5 474 35.0
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.2e-39 166.8 476 33.4
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 9.3e-39 165.6 501 33.9
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.2e-38 165.2 466 40.1
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.6e-38 164.9 412 35.4
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.6e-38 164.9 412 35.4
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 2.7e-38 164.1 469 35.2
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 4.6e-38 163.3 412 34.7
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.7e-37 161.4 376 36.4
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.1e-36 158.7 494 34.6
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.1e-35 154.5 466 33.7
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.1e-35 154.5 458 35.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.1e-35 154.5 372 35.2
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.1e-35 154.5 483 30.8
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 3.6e-35 153.7 435 35.6
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 4.8e-35 153.3 468 35.5
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-34 151.8 520 31.5
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.8e-34 151.4 380 37.9
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 3.1e-34 150.6 513 31.8
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 4.0e-34 150.2 442 34.2
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 4.0e-34 150.2 413 32.9
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 4.0e-34 150.2 413 32.9
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.3e-34 149.8 417 36.5
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 6.9e-34 149.4 411 35.0
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 6.9e-34 149.4 425 34.4
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.0e-34 149.1 456 31.8
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.0e-33 147.9 489 33.5
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.6e-33 147.5 488 30.5
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 3.4e-33 147.1 437 35.2
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.4e-33 147.1 453 32.0
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.4e-33 146.7 454 33.3
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.2e-32 144.4 421 35.9
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 6.4e-32 142.9 389 35.5
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.1e-31 142.1 492 30.3
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.9e-31 141.4 373 31.9
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.4e-31 141.0 394 32.2
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.4e-31 141.0 399 32.8
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 3.2e-31 140.6 391 34.3
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 5.4e-31 139.8 520 32.7
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 7.1e-31 139.4 486 32.1
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 7.1e-31 139.4 223 45.3
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 9.3e-31 139.0 250 41.6
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.6e-30 138.3 406 32.0
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.1e-30 137.9 235 40.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.7e-30 137.5 340 36.2
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.7e-30 137.5 484 32.6
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 6.0e-30 136.3 525 27.8
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 7.9e-30 136.0 477 30.6
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 7.9e-30 136.0 466 36.7
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.0e-29 135.6 524 28.4
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.3e-29 135.2 375 33.1
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.7e-29 134.8 471 33.3
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 5.1e-29 133.3 439 37.6
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 5.1e-29 133.3 428 32.9
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 5.1e-29 133.3 482 31.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.9e-28 131.3 461 32.3
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.9e-28 131.3 497 31.4
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 4.3e-28 130.2 398 33.2
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 4.3e-28 130.2 398 33.2
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 4.3e-28 130.2 280 38.9
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 5.6e-28 129.8 234 39.7
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 7.4e-28 129.4 477 33.8
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.3e-27 128.6 511 29.2
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.6e-27 128.3 480 30.2
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.6e-27 128.3 507 32.1
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.1e-27 127.9 230 40.0
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 3.6e-27 127.1 400 32.2
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.6e-27 127.1 349 35.0
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 6.2e-27 126.3 480 30.0
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.1e-26 125.6 513 27.9
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.4e-26 125.2 554 28.9
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.8e-26 124.8 428 32.5
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.4e-26 124.4 397 32.2
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.0e-26 123.6 428 33.2
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 6.9e-26 122.9 431 32.7
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.2e-25 122.1 276 39.1
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 7.6e-25 119.4 458 28.8
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 9.9e-25 119.0 533 29.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.9e-25 119.0 510 28.0
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.9e-24 117.5 529 28.9
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.8e-24 117.1 534 29.8
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.4e-23 115.2 455 30.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.2e-23 114.0 473 29.2
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.2e-23 113.6 479 33.4
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 4.2e-23 113.6 411 29.7
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.2e-22 112.1 560 28.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.1e-22 111.3 494 26.7
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.1e-22 111.3 494 26.7
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.5e-22 110.5 520 27.3
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.6e-22 110.2 532 27.3
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 7.9e-22 109.4 396 28.5
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.3e-21 108.6 521 27.1
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 2.3e-21 107.8 514 34.0
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.3e-21 107.8 577 28.1
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.0e-21 107.5 512 28.1
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.0e-21 107.5 519 29.3
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 3.9e-21 107.1 489 27.8
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 5.1e-21 106.7 219 36.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.1e-20 105.5 568 26.6
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.6e-20 103.2 404 30.0
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 9.6e-20 102.4 536 28.9
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.3e-19 102.1 539 28.8
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.1e-19 101.3 521 28.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.1e-19 101.3 192 40.1
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.8e-19 100.9 400 29.0
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.7e-19 100.5 344 31.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.1e-18 99.0 397 29.7
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.1e-18 99.0 415 31.6
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.4e-18 98.6 145 44.1
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.4e-18 98.6 540 25.9
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.4e-18 97.8 427 30.9
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 6.9e-18 96.3 459 27.9
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.3e-16 92.0 194 36.6
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.9e-16 90.9 484 24.6
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.9e-16 90.9 402 30.1
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 4.2e-15 87.0 436 27.8
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.3e-13 81.3 180 36.1
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 6.7e-13 79.7 402 27.1
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 8.7e-13 79.3 144 37.5
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.1e-12 79.0 122 45.9
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.5e-12 78.6 140 38.6
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 5.7e-12 76.6 138 37.7
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 7.4e-12 76.3 148 41.2
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 8.2e-11 72.8 137 37.2
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.1e-10 72.4 401 27.4
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 1.4e-10 72.0 159 36.5
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.4e-10 72.0 216 31.5
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 5.3e-10 70.1 412 27.7
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 6.9e-10 69.7 355 27.3
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 2.6e-09 67.8 385 25.2
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.6e-09 67.8 409 27.1
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 3.4e-09 67.4 145 35.9
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 6.5e-08 63.2 119 39.5
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.4e-07 62.0 176 33.0
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 3.2e-07 60.8 90 43.3
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 3.2e-07 60.8 143 32.9
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.6e-06 58.5 133 32.3
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.5e-06 57.4 203 32.5
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 7.9e-06 56.2 98 36.7


User provided reference genes

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