Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 4.3e-231 804.3 404 100.0
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 3.6e-44 183.3 219 44.7
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 1.5e-42 177.9 335 36.7
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 3.4e-42 176.8 299 38.1
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 1.4e-40 171.4 308 36.0
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 1.6e-39 167.9 323 35.3
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 7.8e-39 165.6 301 36.2
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 6.6e-38 162.5 205 42.9
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 2.1e-36 157.5 299 33.1
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 1.8e-35 154.5 305 35.4
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 1.8e-35 154.5 309 33.3
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 1.5e-34 151.4 207 38.2
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 1.3e-30 138.3 163 46.0
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 5.1e-30 136.3 306 29.4
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 8.6e-30 135.6 328 30.2
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 1.1e-29 135.2 208 32.7
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 1.5e-29 134.8 162 45.7
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 7.3e-29 132.5 315 29.5
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 7.3e-29 132.5 215 35.8
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 2.1e-28 131.0 310 31.3
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 3.6e-28 130.2 318 29.2
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 1.4e-27 128.3 238 34.5
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 1.8e-27 127.9 329 30.7
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 1.9e-24 117.9 194 34.5
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 4.1e-24 116.7 241 30.3
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 9.2e-24 115.5 340 30.9
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 1.0e-22 112.1 273 30.0
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.3e-22 111.7 172 38.4
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.3e-22 110.9 172 38.4
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 3.0e-22 110.5 329 30.1
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.5e-21 108.2 172 37.2
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 1.9e-21 107.8 158 39.9
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 1.9e-21 107.8 341 27.9
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.5e-21 107.5 172 37.2
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 2.5e-21 107.5 160 36.2
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 3.3e-21 107.1 338 30.5
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 4.3e-21 106.7 158 39.9
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 5.6e-21 106.3 323 27.9
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 4.7e-20 103.2 202 33.2
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 2.0e-18 97.8 194 29.4
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 1.1e-16 92.0 163 31.9
Cc08_g11800 Coffea canephora HOM05D008757 ORTHO05D010583 1.9e-16 91.3 133 37.6
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 1.3e-14 85.1 131 35.1
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 1.7e-14 84.7 130 34.6
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 1.9e-13 81.3 166 31.3
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 4.3e-13 80.1 166 31.3
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 9.6e-13 79.0 126 34.1
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 1.2e-12 78.6 135 32.6
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 1.2e-12 78.6 160 31.9
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 2.8e-12 77.4 160 31.9
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 6.2e-12 76.3 194 28.4
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 8.1e-12 75.9 216 28.7
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 8.1e-12 75.9 166 30.7
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 8.1e-12 75.9 126 36.5
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 8.1e-12 75.9 109 40.4
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 1.1e-11 75.5 162 29.0
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 4.0e-11 73.6 198 23.7
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 6.9e-11 72.8 126 32.5
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 9.0e-11 72.4 133 33.1
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 1.7e-09 68.2 106 36.8
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 2.2e-09 67.8 240 22.9
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 3.8e-09 67.0 154 30.5
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 3.8e-09 67.0 168 29.2
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 8.4e-09 65.9 106 32.1
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 2.4e-08 64.3 144 29.2
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 2.4e-08 64.3 147 26.5
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 1.2e-07 62.0 150 27.3
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 1.6e-07 61.6 117 33.3
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 2.1e-07 61.2 106 34.0
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 2.7e-07 60.8 110 36.4
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 1.3e-06 58.5 94 33.0
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 3.9e-06 57.0 106 31.1


User provided reference genes

Program Settings