Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 4.9e-196 687.6 334 100.0
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 7.6e-157 557.4 333 79.3
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 4.9e-156 554.7 332 79.5
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 2.7e-154 548.9 333 77.5
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 8.7e-153 543.9 335 77.9
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 3.3e-152 542.0 335 77.9
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.8e-151 538.9 335 77.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 9.0e-150 533.9 335 77.0
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 9.0e-150 533.9 335 76.4
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 2.0e-149 532.7 334 76.3
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 4.5e-149 531.6 333 76.3
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 5.8e-149 531.2 335 75.8
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.6e-149 530.8 336 74.7
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 9.9e-149 530.4 335 75.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.7e-148 529.6 333 75.1
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 4.9e-148 528.1 333 75.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.9e-148 528.1 333 75.7
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.4e-148 527.7 333 76.0
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 2.4e-147 525.8 333 73.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.4e-147 525.8 333 74.5
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 4.2e-147 525.0 333 72.4
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 4.2e-147 525.0 336 74.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 5.5e-147 524.6 336 75.3
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.1e-147 524.2 333 72.7
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.2e-146 523.5 333 72.7
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-146 523.5 334 72.5
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.6e-146 523.1 336 75.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.1e-146 522.7 334 72.5
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 2.7e-146 522.3 337 73.9
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.7e-146 522.3 334 75.4
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 3.5e-146 521.9 334 72.2
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 4.6e-146 521.5 332 72.9
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 4.6e-146 521.5 332 72.9
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 6.0e-146 521.2 335 75.2
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.0e-145 520.4 332 73.2
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.3e-145 520.0 332 72.6
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.3e-145 520.0 333 71.8
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.8e-145 519.6 336 73.5
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 3.0e-145 518.8 334 73.7
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.9e-145 518.5 333 72.1
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.9e-145 518.5 333 72.1
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.7e-145 517.7 335 74.6
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 8.7e-145 517.3 333 72.7
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 8.7e-145 517.3 338 73.7
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.1e-144 516.9 333 72.4
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.1e-144 516.9 334 73.7
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.1e-144 516.9 323 75.5
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.9e-144 516.2 335 74.3
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.9e-144 516.2 334 73.4
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 3.3e-144 515.4 333 73.9
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 5.6e-144 514.6 335 73.1
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 5.6e-144 514.6 337 73.0
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.6e-143 513.1 335 74.6
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.1e-143 512.7 336 73.2
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 3.7e-143 511.9 333 73.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 8.1e-143 510.8 335 72.5
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.8e-142 509.6 336 71.4
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 2.4e-142 509.2 319 73.7
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.4e-142 509.2 336 72.6
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.1e-142 508.8 333 72.7
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 5.3e-142 508.1 334 73.1
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.2e-141 506.9 336 71.1
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.5e-141 506.5 334 71.0
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.5e-141 506.5 336 71.7
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.5e-141 506.5 334 72.8
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 1.3e-140 503.4 336 72.6
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.7e-140 503.1 336 72.0
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-140 502.7 332 70.8
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 6.5e-140 501.1 334 71.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 8.4e-140 500.7 333 72.4
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.1e-139 500.4 335 72.2
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-139 500.4 335 72.2
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.5e-139 499.2 333 71.5
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.2e-139 498.8 337 70.9
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.2e-139 498.8 334 71.0
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 3.2e-139 498.8 337 70.6
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 9.3e-139 497.3 327 70.3
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.2e-138 496.9 333 69.7
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.1e-138 496.1 337 71.2
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 4.6e-138 495.0 335 69.6
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.0e-137 493.8 341 69.2
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.3e-137 493.4 335 71.3
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.8e-137 493.0 319 69.9
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.0e-137 492.3 338 72.5
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.0e-137 492.3 332 69.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 3.0e-137 492.3 335 70.1
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.0e-137 492.3 335 72.2
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.9e-137 491.9 337 72.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 3.9e-137 491.9 335 69.9
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 5.1e-137 491.5 337 69.7
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 6.7e-137 491.1 302 77.2
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 8.7e-137 490.7 333 71.5
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.1e-136 490.3 310 76.1
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.5e-136 489.2 336 67.3
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 5.7e-136 488.0 341 69.5
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 5.7e-136 488.0 335 69.9
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.6e-135 486.5 333 68.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.6e-135 486.5 333 70.6
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.8e-135 485.7 342 69.6
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.8e-135 485.7 340 68.2
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.1e-134 483.8 337 70.0
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.8e-134 483.0 337 69.4
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 2.4e-134 482.6 337 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 9.0e-134 480.7 334 69.5
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 4.5e-133 478.4 306 74.2
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.3e-132 476.9 298 74.8
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.7e-132 476.5 337 68.2
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.7e-132 476.5 334 66.8
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.9e-132 475.7 337 69.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.3e-129 466.1 314 71.0
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 3.0e-129 465.7 334 67.1
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 4.3e-128 461.8 342 66.1
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.8e-126 456.4 300 72.3
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.8e-126 456.4 303 71.3
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.8e-126 456.4 324 66.0
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.1e-126 455.7 326 67.5
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 5.3e-126 454.9 321 67.9
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 5.9e-125 451.4 332 68.1
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 7.7e-125 451.1 338 66.0
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 5.0e-124 448.4 339 66.4
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.8e-119 432.6 332 63.6
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 9.1e-118 427.6 335 62.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 7.7e-117 424.5 322 66.1
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 7.7e-117 424.5 322 65.2
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 8.8e-113 411.0 324 62.3
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.1e-110 404.1 323 61.6
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.9e-107 393.3 232 78.9
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.2e-107 391.3 295 65.1
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 6.7e-105 384.8 313 61.7
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.1e-102 374.4 305 63.0
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 8.0e-98 361.3 204 81.9
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 3.0e-97 359.4 334 56.3
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-94 350.9 198 82.8
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 5.5e-91 338.6 198 76.8
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 6.3e-87 325.1 235 66.4
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.6e-85 320.5 219 71.2
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 5.9e-85 318.5 177 83.1
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.2e-80 304.3 231 63.6
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.3e-75 286.2 212 68.4
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.2e-69 267.7 397 38.5
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 3.5e-69 266.2 341 42.5
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 5.6e-67 258.8 303 43.2
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.1e-66 255.0 229 58.5
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.5e-61 239.6 197 58.9
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 8.6e-60 235.0 336 39.6
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.1e-59 234.6 221 55.7
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.1e-51 208.0 333 36.6
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.8e-47 193.0 125 75.2
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.7e-44 184.1 172 57.6
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-33 147.9 148 54.7
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.4e-31 139.0 114 58.8
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 5.1e-28 129.4 129 52.7
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.8e-26 122.9 64 85.9
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.9e-19 100.9 57 78.9
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 1.4e-06 58.2 43 62.8


User provided reference genes

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