Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 2.0e-222 775.4 368 100.0
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.3e-103 378.6 310 62.6
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.8e-101 372.5 289 64.4
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 4.7e-99 365.5 290 63.1
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 6.1e-99 365.2 290 62.1
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 8.0e-99 364.8 288 61.8
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.8e-98 363.6 312 58.0
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.3e-98 363.2 371 52.3
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.0e-98 362.8 299 60.9
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 6.7e-98 361.7 288 63.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 7.4e-97 358.2 317 57.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 9.7e-97 357.8 288 61.1
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 9.7e-97 357.8 307 58.3
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.3e-96 357.5 320 56.6
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.7e-96 357.1 318 59.1
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 1.7e-96 357.1 305 60.0
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.2e-96 356.7 294 59.9
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.2e-96 356.7 298 60.7
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.8e-96 356.3 309 57.9
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 3.7e-96 355.9 332 54.8
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 3.7e-96 355.9 290 61.0
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 6.3e-96 355.1 297 59.3
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 8.2e-96 354.8 334 55.4
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.4e-95 354.0 304 57.9
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 2.4e-95 353.2 302 59.6
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 7.0e-95 351.7 312 58.3
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 7.0e-95 351.7 339 54.9
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 9.1e-95 351.3 317 56.5
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.2e-94 350.9 304 58.9
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.6e-94 350.5 289 60.9
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.6e-94 350.5 278 63.3
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 2.0e-94 350.1 300 59.0
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 2.0e-94 350.1 284 58.8
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.5e-94 349.4 313 56.5
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.9e-94 348.6 289 59.2
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 7.7e-94 348.2 365 52.9
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.3e-93 347.4 299 59.2
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.7e-93 347.1 333 53.8
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.8e-93 345.9 285 60.7
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 3.8e-93 345.9 287 61.7
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 5.0e-93 345.5 308 56.2
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.0e-93 345.5 313 56.9
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 5.0e-93 345.5 303 58.1
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 6.5e-93 345.1 313 56.9
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 8.5e-93 344.7 305 57.7
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.5e-92 344.0 356 51.4
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.5e-92 344.0 308 58.1
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.5e-92 343.2 306 55.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.2e-92 342.8 283 60.1
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 3.2e-92 342.8 286 59.1
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.2e-92 342.8 303 58.4
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.2e-92 342.4 369 52.3
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 5.5e-92 342.0 307 56.7
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 9.4e-92 341.3 344 52.0
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.2e-91 340.9 323 54.2
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.6e-91 340.5 304 57.9
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 6.1e-91 338.6 334 54.2
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.4e-90 337.4 285 58.2
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.4e-90 337.4 362 50.3
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.4e-90 337.4 276 60.5
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.8e-90 337.0 307 55.7
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.3e-90 336.7 305 56.7
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 2.3e-90 336.7 289 57.4
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 3.0e-90 336.3 301 56.1
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 4.0e-90 335.9 315 54.6
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 4.0e-90 335.9 311 56.3
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 6.7e-90 335.1 310 58.7
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 6.7e-90 335.1 346 52.3
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 8.8e-90 334.7 276 59.8
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 8.8e-90 334.7 331 54.1
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.5e-89 334.0 363 52.1
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.5e-89 334.0 280 59.6
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.6e-89 333.2 287 56.8
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 3.3e-89 332.8 287 57.1
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 4.4e-89 332.4 316 54.7
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.4e-89 332.4 307 54.7
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 5.7e-89 332.0 306 55.2
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 7.5e-89 331.6 304 54.6
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 7.5e-89 331.6 288 57.3
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 9.7e-89 331.3 307 55.0
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 1.7e-88 330.5 328 53.4
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.7e-88 330.5 283 58.7
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 2.2e-88 330.1 283 58.3
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.7e-88 329.3 295 58.0
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.7e-88 329.3 273 59.0
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 4.8e-88 328.9 277 60.3
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.1e-87 327.8 352 49.4
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.1e-87 327.8 289 55.7
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.4e-87 327.4 317 54.3
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 2.4e-87 326.6 281 58.0
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 4.1e-87 325.9 301 54.2
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 4.1e-87 325.9 311 54.0
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 7.0e-87 325.1 336 51.2
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 7.0e-87 325.1 342 51.5
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.0e-86 323.6 301 54.8
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 2.0e-86 323.6 299 55.5
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 2.7e-86 323.2 288 58.0
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 3.5e-86 322.8 287 55.7
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.5e-86 322.8 324 50.6
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 4.5e-86 322.4 332 53.0
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 7.7e-86 321.6 287 55.4
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.3e-85 320.9 301 56.5
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.7e-85 320.5 301 53.8
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 2.2e-85 320.1 301 54.2
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.2e-85 320.1 278 59.0
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.2e-85 320.1 294 56.1
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 3.2e-84 316.2 322 51.2
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.2e-84 315.8 387 45.0
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 7.2e-84 315.1 301 53.5
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.6e-83 313.9 351 47.3
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 2.1e-83 313.5 287 54.7
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.4e-82 310.8 269 57.2
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 7.5e-81 305.1 283 54.1
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 6.3e-80 302.0 299 53.2
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 8.3e-80 301.6 282 54.6
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.4e-79 300.8 324 47.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 2.7e-78 296.6 368 44.6
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.6e-75 287.3 243 59.7
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.8e-74 283.9 350 44.9
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.8e-73 278.1 304 48.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 6.3e-72 275.4 304 50.0
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.2e-71 271.6 313 47.3
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 9.2e-71 271.6 269 52.0
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.0e-70 270.4 347 45.5
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 4.5e-70 269.2 306 46.1
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.3e-69 267.7 333 43.5
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 2.3e-69 266.9 306 45.8
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 2.9e-69 266.5 293 48.1
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.9e-68 263.8 286 51.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 8.3e-64 248.4 174 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 3.2e-63 246.5 284 47.5
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 9.2e-63 245.0 269 46.1
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.2e-62 244.6 273 46.2
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.2e-62 244.6 276 43.8
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 2.3e-61 240.4 187 62.0
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 7.3e-60 235.3 171 64.3
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.6e-59 233.0 305 42.0
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.6e-57 226.9 279 44.4
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 4.1e-55 219.5 164 62.8
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 5.4e-55 219.2 157 64.3
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 7.0e-55 218.8 198 57.1
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 7.0e-55 218.8 208 53.8
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 7.0e-55 218.8 180 58.9
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 7.0e-55 218.8 168 60.7
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 9.2e-55 218.4 190 54.2
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.1e-54 217.2 272 41.2
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.5e-54 216.5 245 46.1
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.7e-53 214.2 197 57.9
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.3e-53 213.8 197 57.9
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 2.3e-50 203.8 142 64.8
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 6.8e-50 202.2 167 56.9
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 8.6e-45 185.3 568 28.5
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 4.0e-42 176.4 187 50.8
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-39 168.3 122 60.7
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 2.4e-39 167.2 181 48.1
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 2.7e-38 163.7 310 33.5
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 6.6e-37 159.1 252 36.9
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.1e-35 152.1 118 55.9
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 1.8e-34 151.0 96 69.8
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 3.2e-31 140.2 86 75.6
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 1.6e-30 137.9 364 27.5
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.5e-30 136.7 90 64.4
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.6e-30 136.3 93 60.2
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.6e-30 136.3 93 60.2
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.3e-29 134.8 88 68.2
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.9e-29 133.3 84 75.0
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 6.6e-29 132.5 88 69.3
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 7.3e-28 129.0 83 68.7
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 1.4e-26 124.8 147 46.9
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.6e-25 119.0 149 43.0
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 6.4e-24 115.9 88 58.0
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 6.9e-18 95.9 60 61.7
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 3.9e-13 80.1 56 64.3
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.7e-13 79.3 51 70.6
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 6.7e-13 79.3 55 67.3
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 8.7e-13 79.0 149 38.9
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 5.3e-10 69.7 47 66.0
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 5.8e-09 66.2 45 64.4


User provided reference genes

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