Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.8e-174 615.1 305 100.0
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 4.0e-120 435.3 257 82.9
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 1.9e-114 416.4 274 75.5
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.9e-114 416.4 277 74.4
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 6.1e-113 411.4 275 74.5
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 6.1e-113 411.4 266 75.2
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 8.0e-113 411.0 261 77.8
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 8.0e-113 411.0 262 78.6
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.0e-112 408.7 270 74.4
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.0e-112 408.7 263 76.0
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 5.2e-112 408.3 271 75.3
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 5.2e-112 408.3 273 75.1
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 6.8e-112 407.9 266 75.6
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.2e-111 407.1 262 76.0
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.5e-111 406.8 272 76.1
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.6e-111 406.0 260 77.7
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 5.7e-111 404.8 281 73.7
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 7.5e-111 404.4 275 72.7
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.3e-110 403.7 261 77.0
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 2.9e-110 402.5 261 76.2
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 1.4e-109 400.2 263 74.9
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.8e-109 399.8 263 75.3
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 3.2e-109 399.1 258 76.0
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 4.1e-109 398.7 261 74.7
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 4.1e-109 398.7 281 73.7
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 5.4e-109 398.3 282 69.9
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 7.0e-109 397.9 259 76.1
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 7.0e-109 397.9 259 74.9
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 7.0e-109 397.9 262 76.7
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 9.2e-109 397.5 261 75.5
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 1.2e-108 397.1 258 77.5
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.6e-108 396.7 259 75.7
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.6e-108 396.7 277 73.6
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 2.0e-108 396.4 270 74.1
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 2.0e-108 396.4 273 74.7
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 2.7e-108 396.0 261 74.7
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 4.6e-108 395.2 259 75.7
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 4.6e-108 395.2 281 73.0
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.0e-107 394.0 260 76.5
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.7e-107 393.3 261 74.7
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 5.0e-107 391.7 264 73.9
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 6.6e-107 391.3 260 74.2
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 6.6e-107 391.3 261 75.1
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 8.6e-107 391.0 260 76.5
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.1e-106 390.6 261 74.3
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.1e-106 390.6 264 73.5
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 1.5e-106 390.2 260 75.8
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 1.5e-106 390.2 263 74.5
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.3e-106 389.0 295 68.5
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 7.3e-106 387.9 261 73.6
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 7.3e-106 387.9 262 74.4
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 9.5e-106 387.5 262 74.0
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 1.2e-105 387.1 264 73.1
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.2e-105 387.1 264 73.1
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.8e-105 386.0 279 70.3
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 3.6e-105 385.6 276 71.4
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 8.0e-105 384.4 257 74.3
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.0e-104 384.0 277 70.8
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.8e-104 383.3 232 79.3
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 2.3e-104 382.9 261 72.8
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 5.2e-104 381.7 236 79.2
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 6.8e-104 381.3 285 69.1
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.2e-103 380.6 282 69.9
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 3.4e-103 379.0 284 69.7
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 4.4e-103 378.6 253 75.1
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.8e-103 378.3 263 72.6
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 5.8e-103 378.3 246 76.0
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.3e-102 377.1 280 69.3
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.7e-102 376.7 283 68.2
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 2.2e-102 376.3 282 69.5
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 2.9e-102 375.9 262 74.0
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 3.7e-102 375.6 282 69.1
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.7e-102 375.6 262 72.5
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 4.9e-102 375.2 264 72.3
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.4e-101 373.6 282 68.8
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.4e-101 373.6 282 68.8
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.2e-101 372.5 256 72.7
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 7.0e-101 371.3 278 70.9
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.6e-100 370.2 260 71.5
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 2.0e-100 369.8 261 70.5
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 2.7e-100 369.4 261 73.2
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.5e-100 369.0 260 75.0
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 4.6e-100 368.6 257 71.2
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 3.9e-99 365.5 260 68.5
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 5.0e-99 365.2 242 74.8
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 6.6e-99 364.8 289 66.4
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.5e-98 363.6 283 66.1
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.9e-98 363.2 260 71.9
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.9e-98 363.2 277 69.0
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 2.5e-98 362.8 289 67.8
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 5.6e-98 361.7 224 78.1
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.6e-97 360.1 263 73.0
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 6.8e-96 354.8 224 77.7
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 2.2e-94 349.7 254 70.5
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 6.4e-94 348.2 255 68.6
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 3.9e-91 339.0 232 72.8
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 4.3e-90 335.5 240 73.3
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 2.1e-89 333.2 213 76.1
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.4e-88 330.5 266 65.8
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.7e-86 323.6 213 73.7
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 4.0e-80 302.4 276 59.4
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.4e-78 295.0 224 68.3
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.5e-74 283.1 169 81.7
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 7.6e-71 271.6 280 58.6
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.9e-61 240.4 208 58.7
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.2e-60 237.7 147 76.2
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 4.6e-60 235.7 214 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 8.7e-59 231.5 214 54.2
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.5e-58 230.7 147 76.2
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 5.6e-58 228.8 260 48.5
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 5.5e-53 212.2 147 72.1
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.6e-52 210.7 216 49.5
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.1e-52 210.3 264 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 6.7e-51 205.3 215 47.4
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 4.1e-48 196.1 174 59.2
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 9.0e-48 194.9 99 90.9
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 4.3e-42 176.0 211 45.5
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 8.2e-41 171.8 147 61.9
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.9e-39 165.6 110 75.5
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 3.9e-27 126.3 221 35.7
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 2.6e-26 123.6 179 39.1
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.2e-25 118.6 89 67.4
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.8e-24 117.5 77 76.6
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 5.3e-24 115.9 92 58.7
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.9e-22 110.2 92 60.9
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 7.7e-07 58.9 58 56.9


User provided reference genes

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