Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G209 Amborella trichopoda HOM05D006831 ORTHO05D008256 1.2e-92 343.2 182 100.0
MBI04_g30107_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 1.2e-36 157.1 189 45.5
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 1.2e-36 157.1 180 43.9
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 3.6e-36 155.6 185 43.2
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 3.1e-35 152.5 184 44.0
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 2.0e-34 149.8 186 41.9
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 5.8e-34 148.3 185 42.2
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 5.8e-34 148.3 184 42.4
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 7.6e-34 147.9 178 40.4
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 7.6e-34 147.9 176 42.6
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 9.9e-34 147.5 184 42.9
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 1.3e-33 147.1 184 42.4
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 1.7e-33 146.7 185 44.3
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 2.2e-33 146.4 187 42.8
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 6.4e-33 144.8 186 41.9
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 6.4e-33 144.8 184 42.4
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 8.4e-33 144.4 184 42.4
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 1.4e-32 143.7 192 43.8
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 2.4e-32 142.9 185 42.7
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 2.4e-32 142.9 184 41.8
FvH4_6g32300 Fragaria vesca HOM05D006831 ORTHO05D008256 3.2e-32 142.5 176 40.3
FAN05G2796 Fragaria x ananassa HOM05D006831 ORTHO05D008256 3.2e-32 142.5 176 40.3
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 4.1e-32 142.1 185 42.7
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 1.6e-31 140.2 184 40.8
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 2.1e-31 139.8 184 40.8
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 3.5e-31 139.0 185 39.5
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 4.6e-31 138.7 184 41.3
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 4.6e-31 138.7 184 42.4
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 6.0e-31 138.3 176 39.8
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 7.8e-31 137.9 176 39.8
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 1.0e-30 137.5 167 43.1
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 1.0e-30 137.5 185 42.7
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 1.3e-30 137.1 184 41.3
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 1.3e-30 137.1 167 41.9
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.7e-30 136.7 176 39.2
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 1.7e-30 136.7 184 39.1
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 1.7e-30 136.7 184 39.1
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 2.3e-30 136.3 189 41.8
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 2.3e-30 136.3 167 41.3
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 2.3e-30 136.3 174 41.4
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 3.9e-30 135.6 173 40.5
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 5.1e-30 135.2 180 41.7
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 6.6e-30 134.8 184 38.6
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 1.1e-29 134.0 186 43.5
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 1.5e-29 133.7 161 46.0
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 1.5e-29 133.7 161 46.0
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 1.5e-29 133.7 175 44.0
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 1.5e-29 133.7 164 43.3
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 1.5e-29 133.7 183 39.9
Eucgr.F03071 Eucalyptus grandis HOM05D006831 ORTHO05D008256 2.5e-29 132.9 174 40.2
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 3.3e-29 132.5 151 42.4
SalBow2G3477 Salvia bowleyana HOM05D006831 ORTHO05D008256 9.6e-29 131.0 185 38.4
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 1.6e-28 130.2 189 42.3
VMungo0331G1511 Vigna mungo HOM05D006831 ORTHO05D008256 1.6e-28 130.2 178 38.8
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 2.8e-28 129.4 184 40.8
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 3.6e-28 129.0 173 37.6
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 4.7e-28 128.6 169 38.5
Psat4g221040 Pisum sativum HOM05D006831 ORTHO05D008256 8.1e-28 127.9 182 39.6
Aqoxy7G01449 Aquilegia oxysepala HOM05D006831 ORTHO05D008256 1.4e-27 127.1 176 40.3
PGR102G2866 Punica granatum HOM05D006831 ORTHO05D008256 2.4e-27 126.3 176 39.2
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 3.1e-27 125.9 162 38.9
Medtr8g014330 Medicago truncatula HOM05D006831 ORTHO05D008256 3.1e-27 125.9 172 37.8
CiPaw.02G146100 Carya illinoinensis HOM05D006831 ORTHO05D008256 4.0e-27 125.6 185 37.8
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 5.2e-27 125.2 169 39.1
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 8.9e-27 124.4 165 40.6
Phvul.010G145700 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 8.9e-27 124.4 167 40.7
arahy.Tifrunner.gnm1.ann1.4LXS91 Arachis hypogaea HOM05D006831 ORTHO05D008256 1.5e-26 123.6 173 39.3
arahy.Tifrunner.gnm1.ann1.U3LBHC Arachis hypogaea HOM05D006831 ORTHO05D008256 1.5e-26 123.6 173 39.3
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 1.5e-26 123.6 131 44.3
Glyma.08G201400 Glycine max HOM05D006831 ORTHO05D008256 2.6e-26 122.9 171 39.2
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 3.4e-26 122.5 173 39.3
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 4.4e-26 122.1 171 39.8
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 5.8e-26 121.7 177 37.9
Ah.01g022020 Amaranthus hybridus HOM05D006831 ORTHO05D008256 7.6e-26 121.3 172 39.0
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 1.7e-25 120.2 170 38.2
Glyma.07G015900 Glycine max HOM05D006831 ORTHO05D008256 1.7e-25 120.2 171 38.0
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 2.2e-25 119.8 201 37.8
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 8.4e-25 117.9 203 37.4
Lsat_1_v5_gn_1_36980 Lactuca sativa HOM05D006831 ORTHO05D008256 2.4e-24 116.3 172 40.1
HanXRQChr02g0032201 Helianthus annuus HOM05D006831 ORTHO05D008256 3.2e-24 115.9 148 45.3
Lalb_Chr04g0262951 Lupinus albus HOM05D006831 ORTHO05D008256 5.4e-24 115.2 181 34.8
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 2.7e-23 112.8 129 44.2
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 4.6e-23 112.1 158 39.2
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 6.0e-23 111.7 132 43.9
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 7.8e-23 111.3 171 36.8
Sed0018864 Sechium edule HOM05D006831 ORTHO05D008256 7.8e-23 111.3 161 42.2
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 8.1e-20 101.3 175 33.7
THA.LOC104801499 Tarenaya hassleriana HOM05D006831 ORTHO05D008256 5.8e-18 95.1 115 40.0
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 6.4e-17 91.7 173 31.8
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 6.4e-17 91.7 173 31.8
AT1G79760 Arabidopsis thaliana HOM05D006831 ORTHO05D008256 8.4e-17 91.3 101 46.5
HPP92_006371 Vanilla planifolia HOM05D006831 ORTHO05D008256 8.4e-17 91.3 159 36.5
AL2G41800 Arabidopsis lyrata HOM05D006831 ORTHO05D008256 1.4e-16 90.5 99 47.5
CARHR262750 Cardamine hirsuta HOM05D006831 ORTHO05D008256 1.9e-16 90.1 101 46.5
CARHR262770 Cardamine hirsuta HOM05D006831 ORTHO05D008256 7.1e-16 88.2 101 45.5
Sp5g36010 Schrenkiella parvula HOM05D006831 ORTHO05D008256 6.0e-15 85.1 101 43.6
Thhalv10018887m.g Eutrema salsugineum HOM05D006831 ORTHO05D008256 1.3e-14 84.0 107 41.1
A07p26290 Brassica napus HOM05D006831 ORTHO05D008256 3.0e-14 82.8 101 43.6
BraA07t30273Z Brassica rapa HOM05D006831 ORTHO05D008256 3.0e-14 82.8 101 43.6
TWI74G0177 Tripterygium wilfordii HOM05D006353 ORTHO05D007993 3.0e-14 82.8 169 32.5
Phvul.005G166600 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 3.9e-14 82.4 171 32.7
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 5.1e-14 82.0 171 28.7
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 5.1e-14 82.0 170 29.4
C06p28690 Brassica napus HOM05D006831 ORTHO05D008256 6.7e-14 81.6 101 42.6
Carub.0002s2775 Capsella rubella HOM05D006831 ORTHO05D008256 8.7e-14 81.3 99 44.4
BcaC08g45266 Brassica carinata HOM05D006831 ORTHO05D008256 1.1e-13 80.9 101 42.6
BolC6t38038H Brassica oleracea HOM05D006831 ORTHO05D008256 1.1e-13 80.9 101 42.6
ATR0681G315 Amborella trichopoda HOM05D006353 ORTHO05D007993 3.3e-13 79.3 115 34.8
Aa31LG4G70 Aethionema arabicum HOM05D006831 ORTHO05D008256 4.3e-13 79.0 93 43.0
HPP92_022856 Vanilla planifolia HOM05D006353 ORTHO05D007993 1.3e-12 77.4 190 29.5
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 6.2e-12 75.1 172 31.4
PSO384G2070 Papaver somniferum HOM05D006353 ORTHO05D007993 1.4e-11 73.9 120 36.7
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 1.4e-11 73.9 102 38.2
VMungo1080G0645 Vigna mungo HOM05D006831 ORTHO05D008256 2.4e-11 73.2 127 37.8
Dinv11379 Davidia involucrata HOM05D006353 ORTHO05D007993 5.3e-11 72.0 166 27.1
PSO339G6092 Papaver somniferum HOM05D006353 ORTHO05D007993 5.3e-11 72.0 120 36.7
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.2e-10 70.9 169 29.0
Manes.09G116500 Manihot esculenta HOM05D006353 ORTHO05D007993 2.6e-10 69.7 104 35.6
Actinidia29043 Actinidia chinensis HOM05D006353 ORTHO05D007993 3.4e-10 69.3 135 32.6
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 4.5e-10 68.9 170 28.2
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 4.5e-10 68.9 170 28.2
Nitab4.5_0003003g0010 Nicotiana tabacum HOM05D006353 ORTHO05D007993 5.8e-10 68.6 108 34.3
COL.COLO4_16552 Corchorus olitorius HOM05D006353 ORTHO05D007993 7.6e-10 68.2 171 26.3
Psat3g120040 Pisum sativum HOM05D006353 ORTHO05D007993 7.6e-10 68.2 129 35.7
PGR004G2035 Punica granatum HOM05D006353 ORTHO05D007993 7.6e-10 68.2 123 32.5
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 9.9e-10 67.8 128 34.4
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 9.9e-10 67.8 102 35.3
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 1.3e-09 67.4 170 28.2
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 1.3e-09 67.4 170 28.2
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 1.3e-09 67.4 170 28.2
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 1.3e-09 67.4 170 28.2
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.2e-09 66.6 107 34.6
Oeu026960.1 Olea europaea HOM05D006353 ORTHO05D007993 2.2e-09 66.6 103 31.1
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 2.2e-09 66.6 111 35.1
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 3.8e-09 65.9 119 31.9
MELO3C012995.2 Cucumis melo HOM05D006831 ORTHO05D008256 3.8e-09 65.9 174 29.9
Eucgr.K01277 Eucalyptus grandis HOM05D006353 ORTHO05D007993 3.8e-09 65.9 108 37.0
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 6.4e-09 65.1 107 34.6
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 6.4e-09 65.1 107 34.6
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 8.4e-09 64.7 107 34.6
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 8.4e-09 64.7 107 34.6
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 1.9e-08 63.5 169 26.0
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 1.9e-08 63.5 171 26.3
Phvul.008G084100 Phaseolus vulgaris HOM05D006353 ORTHO05D007993 3.2e-08 62.8 117 36.8
Aa31LG5G23800 Aethionema arabicum HOM05D006353 ORTHO05D007993 4.2e-08 62.4 153 28.8
Carub.0004s2049 Capsella rubella HOM05D006353 ORTHO05D007993 4.2e-08 62.4 153 29.4
Thhalv10016859m.g Eutrema salsugineum HOM05D006353 ORTHO05D007993 4.2e-08 62.4 153 28.8
Nitab4.5_0001469g0020 Nicotiana tabacum HOM05D006353 ORTHO05D007993 4.2e-08 62.4 108 33.3
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 4.2e-08 62.4 153 28.8
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 5.5e-08 62.0 153 29.4
AT2G38500 Arabidopsis thaliana HOM05D006353 ORTHO05D007993 7.1e-08 61.6 153 28.8
AL4G35790 Arabidopsis lyrata HOM05D006353 ORTHO05D007993 9.3e-08 61.2 153 28.8
SEGI_01266 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 9.3e-08 61.2 173 29.5
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 9.3e-08 61.2 181 28.2
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 1.2e-07 60.8 118 31.4
Actinidia32697 Actinidia chinensis HOM05D006831 ORTHO05D008256 1.6e-07 60.5 92 37.0
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 1.6e-07 60.5 151 28.5
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 1.6e-07 60.5 151 28.5
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 1.6e-07 60.5 151 28.5
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 2.1e-07 60.1 151 28.5
VMungo1383G2355 Vigna mungo HOM05D006353 ORTHO05D007993 2.1e-07 60.1 117 33.3
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 2.7e-07 59.7 173 27.2
SEGI_41305 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 2.7e-07 59.7 175 28.6
Sc20g0006870 Simmondsia chinensis HOM05D006353 ORTHO05D007993 2.7e-07 59.7 140 31.4
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 3.5e-07 59.3 151 28.5
Glyma.18G215200 Glycine max HOM05D006353 ORTHO05D007993 3.5e-07 59.3 117 33.3
BcaB01g03677 Brassica carinata HOM05D006353 ORTHO05D007993 4.6e-07 58.9 154 29.2
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 6.0e-07 58.5 101 34.7
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 6.0e-07 58.5 101 34.7
BcaB01g03678 Brassica carinata HOM05D006353 ORTHO05D007993 7.9e-07 58.2 154 28.6
CSS0001064 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 7.9e-07 58.2 158 25.9
CSS0032329 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 7.9e-07 58.2 158 25.9
BcaB02g09177 Brassica carinata HOM05D006353 ORTHO05D007993 1.3e-06 57.4 99 33.3
CARHR074700 Cardamine hirsuta HOM05D006831 ORTHO05D008256 1.3e-06 57.4 100 36.0
Ca_07754_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 2.3e-06 56.6 120 38.3
Ca_29600_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 2.3e-06 56.6 120 38.3
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 3.9e-06 55.8 104 28.8
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 5.1e-06 55.5 110 30.9
Sc15g0002090 Simmondsia chinensis HOM05D006831 ORTHO05D008256 5.1e-06 55.5 174 28.7


User provided reference genes

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