Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 0.0e+00 2254.2 1161 100.0
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1135.6 1160 53.2
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1124.0 1175 51.9
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 1.6e-307 1059.7 1174 50.7
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 3.4e-305 1052.0 1235 49.4
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 1.3e-304 1050.0 1174 49.7
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 8.2e-291 1004.2 1170 47.6
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 3.9e-285 985.3 1182 47.2
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 1.1e-284 983.8 1250 45.8
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.9e-284 983.0 1170 47.2
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 2.5e-284 982.6 1176 47.2
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.6e-283 979.9 1170 47.0
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 6.3e-283 978.0 1186 46.6
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 2.0e-281 973.0 1163 46.8
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.2e-278 963.8 1166 46.8
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 1.2e-278 963.8 1176 46.4
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 1.8e-277 959.9 1165 46.0
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 2.0e-276 956.4 1175 46.1
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 8.2e-275 951.0 1178 46.9
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.5e-273 946.8 1173 46.0
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 2.6e-273 946.0 1187 46.1
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 2.6e-273 946.0 1168 46.8
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 1.7e-272 943.3 1164 46.0
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 6.5e-272 941.4 1232 44.6
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 8.5e-272 941.0 1187 45.7
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 3.2e-271 939.1 1175 46.7
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 2.7e-270 936.0 1170 45.1
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 1.0e-269 934.1 1176 45.7
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 8.2e-267 924.5 1167 44.8
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 1.1e-266 924.1 1170 44.8
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 2.4e-266 922.9 1184 45.6
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 7.0e-266 921.4 1173 44.5
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 3.5e-265 919.1 1176 44.2
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 4.5e-265 918.7 1162 45.6
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 5.7e-260 901.7 1168 45.8
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 5.7e-260 901.7 1175 45.4
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 1.7e-259 900.2 1176 44.4
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.2e-259 899.8 1132 45.6
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 7.0e-258 894.8 1173 44.4
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.3e-256 890.6 1171 44.8
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.9e-256 889.4 1145 44.3
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 3.3e-252 875.9 1160 43.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 2.8e-251 872.8 1166 43.3
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.1e-250 870.9 1166 43.2
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 3.1e-250 869.4 1181 42.8
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 5.3e-250 868.6 1177 42.8
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 1.7e-248 863.6 1176 42.7
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 3.8e-248 862.4 1165 43.1
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 2.5e-247 859.8 1179 42.7
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 4.2e-247 859.0 1162 43.2
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 3.6e-246 855.9 1169 43.6
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.3e-245 853.2 1161 42.7
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.2e-245 852.0 1158 42.6
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 7.5e-244 848.2 1147 43.4
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 4.8e-243 845.5 1126 44.3
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 3.5e-241 839.3 1173 42.8
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 2.5e-239 833.2 1180 41.5
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 2.8e-238 829.7 1122 43.0
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 5.2e-237 825.5 1176 42.0
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 9.8e-236 821.2 1169 41.1
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.1e-234 817.8 1166 41.3
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.4e-234 817.4 1160 41.6
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.1e-234 815.8 1163 41.2
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 7.0e-234 815.1 1177 41.4
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 9.2e-234 814.7 1168 41.0
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.5e-233 812.8 1168 41.4
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 1.3e-232 810.8 1166 41.3
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 2.9e-232 809.7 1167 41.8
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 5.0e-232 808.9 1159 42.5
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 8.0e-230 801.6 1154 41.6
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 1.4e-229 800.8 1173 40.4
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.7e-227 793.9 1175 40.6
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.9e-227 793.1 1036 43.6
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 6.4e-227 792.0 1177 40.2
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.9e-226 790.4 1086 43.1
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 3.2e-226 789.6 1176 40.6
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 4.1e-226 789.3 1176 40.6
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.7e-224 783.9 1164 40.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.0e-224 782.3 1160 40.7
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.3e-219 767.7 1159 40.9
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 9.9e-212 741.5 1122 40.6
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 8.3e-211 738.4 1176 39.1
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 4.6e-209 732.6 1080 40.8
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.6e-209 732.6 1155 40.0
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 7.8e-209 731.9 1090 41.5
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 6.6e-208 728.8 1041 41.9
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.2e-206 724.5 1156 38.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.8e-205 720.7 1063 42.2
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 8.9e-205 718.4 1115 40.1
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.9e-195 686.8 1054 41.6
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.3e-192 677.2 947 42.0
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.0e-188 664.1 1149 38.2
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 9.3e-186 655.2 936 42.3
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.9e-184 649.8 984 40.2
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.1e-170 605.1 928 39.7
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 4.4e-151 540.0 1207 32.8
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 9.1e-149 532.3 1216 30.9
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.2e-121 442.2 660 39.4
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 8.6e-107 392.9 456 51.5
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 3.3e-106 391.0 1152 28.0
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.4e-104 385.6 705 35.2
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.2e-100 372.5 441 48.5
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.2e-93 347.8 451 45.9
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.6e-87 326.6 543 37.9
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.6e-83 313.5 361 46.3
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.5e-82 312.4 516 38.0
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.3e-82 310.1 458 41.3
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 1.8e-72 278.9 1292 23.5
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.1e-64 253.1 231 56.3
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.4e-64 251.9 235 55.3
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.2e-62 245.4 238 57.1
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.3e-46 193.0 300 41.7
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.1e-44 185.7 229 47.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.0e-42 179.1 180 51.7
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.3e-42 177.9 158 55.1
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.7e-42 176.8 379 34.0
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 9.7e-42 176.8 154 55.2
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 2.8e-41 175.3 263 42.2
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.2e-39 169.9 184 50.5
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.9e-35 154.8 116 66.4
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 6.5e-30 137.5 119 58.0
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.0e-26 125.9 187 40.6
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 2.6e-26 125.6 132 50.8
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 3.3e-26 125.2 363 27.3
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 2.2e-25 122.5 177 42.4
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.6e-23 116.3 122 49.2
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 2.7e-23 115.5 192 37.5
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 7.7e-23 114.0 143 45.5
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 3.8e-22 111.7 96 60.4
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 3.2e-21 108.6 150 44.0
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 3.2e-21 108.6 150 44.0
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.2e-21 107.5 101 56.4
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.2e-21 107.5 101 56.4
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 9.8e-18 97.1 93 54.8
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.7e-17 96.3 277 27.1
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.4e-16 93.2 89 48.3
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 7.0e-16 90.9 151 36.4
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 9.1e-16 90.5 133 36.8
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 5.5e-13 81.3 62 62.9
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.6e-12 79.7 52 75.0
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 2.7e-12 79.0 75 50.7
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 8.0e-12 77.4 126 33.3
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 6.8e-11 74.3 76 44.7
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 7.5e-10 70.9 73 50.7
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.7e-09 69.7 64 54.7
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 9.2e-08 63.9 68 50.0
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.6e-07 63.2 68 50.0
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 2.9e-06 58.9 85 40.0


User provided reference genes

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