Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 0.0e+00 1106.7 568 100.0
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 4.4e-173 612.1 580 59.0
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.4e-171 606.3 569 58.9
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.0e-171 604.7 560 59.3
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-162 577.4 571 56.2
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 6.0e-162 575.1 568 54.4
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 7.8e-162 574.7 567 56.1
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.1e-160 570.9 575 53.9
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.9e-160 570.1 576 55.7
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 5.6e-160 568.5 571 55.3
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 4.7e-159 565.5 572 55.1
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 5.2e-158 562.0 574 55.2
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 8.9e-158 561.2 573 54.6
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.5e-157 560.5 570 55.6
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 5.8e-157 558.5 577 54.8
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 1.7e-156 557.0 581 54.6
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.2e-156 556.6 571 54.8
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 2.9e-156 556.2 574 53.8
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 4.9e-156 555.4 574 55.9
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.9e-155 553.5 568 54.4
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.6e-154 550.4 575 52.9
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 6.0e-154 548.5 571 54.5
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 7.8e-154 548.1 581 54.2
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 6.6e-153 545.0 564 53.0
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 2.5e-152 543.1 585 52.8
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.1e-151 540.0 572 53.8
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.6e-151 539.3 573 52.9
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 3.6e-151 539.3 574 54.2
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.2e-151 538.5 576 54.2
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 8.1e-151 538.1 565 52.4
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.8e-150 537.0 586 52.9
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.8e-150 537.0 565 52.2
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.2e-149 534.3 567 53.3
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.6e-149 533.1 566 52.7
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 3.4e-149 532.7 577 51.3
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.3e-148 530.8 577 52.3
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 2.2e-148 530.0 562 51.6
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.4e-147 527.3 546 52.6
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.9e-147 526.9 588 50.3
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.9e-147 526.9 569 55.0
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 2.4e-147 526.6 565 51.0
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 7.1e-147 525.0 565 51.9
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 7.1e-147 525.0 578 53.5
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 1.0e-145 521.2 570 51.8
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.7e-145 520.4 577 51.0
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 6.6e-145 518.5 582 51.5
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.5e-144 517.3 574 50.7
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.5e-144 517.3 578 50.3
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.9e-144 516.9 580 50.2
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.6e-144 515.4 578 49.5
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 7.3e-144 515.0 580 49.7
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 7.3e-144 515.0 584 50.3
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 9.6e-144 514.6 573 51.8
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.6e-143 513.8 573 51.5
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 8.1e-143 511.5 576 48.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.1e-142 511.1 581 48.9
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.0e-142 509.2 570 51.1
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 6.9e-142 508.4 580 50.5
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 9.0e-142 508.1 581 48.7
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.5e-141 507.3 580 49.5
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.6e-141 506.5 584 48.1
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 7.6e-141 505.0 582 49.3
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 7.6e-141 505.0 559 49.6
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 9.9e-141 504.6 559 49.2
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 4.9e-140 502.3 579 48.4
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.2e-139 499.6 559 49.2
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 5.4e-139 498.8 570 48.8
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.1e-139 498.4 593 50.9
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 9.3e-139 498.0 577 47.8
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.6e-138 497.3 575 48.2
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 7.9e-138 495.0 566 49.5
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.0e-137 494.6 573 50.6
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.8e-137 493.8 581 48.9
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.3e-137 493.4 566 50.2
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 2.3e-137 493.4 582 48.1
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 3.9e-137 492.7 579 48.0
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 6.7e-137 491.9 589 48.7
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.1e-136 491.1 594 49.0
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.9e-136 490.3 580 47.6
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.9e-136 490.3 574 49.3
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 5.6e-136 488.8 552 48.9
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.8e-135 486.5 570 50.2
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.7e-135 486.1 591 48.2
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 4.8e-135 485.7 560 49.8
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 6.9e-134 481.9 591 47.7
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 9.0e-134 481.5 553 49.2
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.3e-132 477.6 565 47.4
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.7e-132 477.2 566 49.3
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.7e-132 477.2 591 47.9
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 4.2e-131 472.6 562 47.3
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 7.1e-131 471.9 579 48.0
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 9.3e-131 471.5 516 51.2
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.8e-129 467.2 510 52.4
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 2.3e-129 466.8 580 47.9
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.9e-128 463.8 629 44.8
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 2.5e-128 463.4 526 48.7
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 7.4e-128 461.8 580 46.7
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 9.6e-128 461.5 628 43.3
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.8e-127 459.9 580 46.6
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.8e-127 459.9 580 46.6
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 8.2e-127 458.4 605 44.3
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.5e-125 454.1 499 48.7
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.5e-125 454.1 591 44.7
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.7e-124 450.7 638 43.9
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 3.8e-124 449.5 498 51.0
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 1.1e-123 448.0 550 46.7
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 7.1e-123 445.3 596 45.1
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.7e-122 443.4 466 52.8
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.5e-122 443.0 570 46.3
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.5e-122 443.0 521 48.9
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 4.6e-122 442.6 578 46.0
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-121 441.0 554 44.9
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.0e-121 439.9 545 45.0
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 6.7e-121 438.7 540 46.3
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 6.7e-121 438.7 521 48.8
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.5e-120 437.6 578 45.5
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.7e-120 435.6 568 45.1
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.4e-118 430.3 510 45.3
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.1e-118 429.9 540 47.4
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.1e-118 429.9 516 46.5
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.0e-117 427.2 492 47.2
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 5.1e-113 412.5 544 44.5
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.7e-112 409.1 579 44.4
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.2e-108 397.1 480 50.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 8.5e-108 395.2 479 50.3
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 9.7e-96 355.1 570 38.8
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.5e-93 346.7 480 45.0
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 2.2e-92 344.0 528 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 5.7e-88 329.3 465 44.7
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 5.9e-85 319.3 390 47.2
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.2e-84 317.4 698 33.7
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-81 306.6 614 35.8
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.2e-80 305.1 610 34.8
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.7e-79 301.2 197 70.1
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.0e-76 292.0 315 52.1
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-72 278.1 181 72.4
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 4.1e-62 243.4 168 64.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.7e-47 194.9 413 36.6
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.7e-45 187.6 157 65.6
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 7.8e-45 186.0 190 57.4
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 2.5e-43 181.0 155 64.5
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.3e-43 180.6 222 43.7
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.2e-42 176.4 151 64.9
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.8e-34 151.0 293 36.2
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 2.4e-33 147.9 99 64.6
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.2e-32 145.6 165 52.1
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 6.0e-29 133.3 137 55.5
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.3e-27 127.5 90 70.0
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.6e-27 126.7 149 48.3
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 3.6e-26 124.0 276 33.7
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 3.8e-23 114.0 180 35.6
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 7.9e-21 106.3 179 34.1
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 7.9e-21 106.3 98 60.2
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 6.0e-13 80.1 99 42.4
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 5.7e-11 73.6 68 48.5
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 5.8e-08 63.5 39 69.2
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 6.5e-07 60.1 126 37.3


User provided reference genes

Program Settings