Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 4.5e-236 820.8 407 100.0
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 1.1e-173 613.6 403 76.9
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 2.4e-173 612.5 403 76.7
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.6e-172 608.2 403 76.2
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 7.8e-172 607.4 414 73.7
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.9e-171 605.1 403 76.2
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 1.1e-170 603.6 398 75.4
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 1.1e-170 603.6 377 78.2
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.9e-170 602.8 377 78.2
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 2.5e-170 602.4 364 80.5
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 4.3e-170 601.7 373 79.6
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 9.5e-170 600.5 375 78.1
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.2e-169 600.1 359 80.8
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 1.6e-169 599.7 406 74.4
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 2.8e-169 599.0 412 73.1
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 3.6e-169 598.6 364 80.5
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 4.7e-169 598.2 359 81.9
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 4.7e-169 598.2 364 80.5
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 6.2e-169 597.8 359 80.8
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 6.2e-169 597.8 359 80.5
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 1.4e-168 596.7 402 74.6
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.8e-168 596.3 367 80.7
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 1.8e-168 596.3 378 78.0
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 3.1e-168 595.5 362 80.4
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 5.2e-168 594.7 414 72.9
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 6.8e-168 594.3 342 83.3
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 6.8e-168 594.3 359 81.1
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 8.9e-168 594.0 358 79.9
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 1.2e-167 593.6 373 77.5
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 2.0e-167 592.8 342 83.3
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 2.6e-167 592.4 363 80.7
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 2.6e-167 592.4 360 79.4
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 3.4e-167 592.0 344 82.3
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 3.4e-167 592.0 375 77.6
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 3.4e-167 592.0 402 74.1
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 4.4e-167 591.7 373 77.2
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 5.8e-167 591.3 373 78.3
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 5.8e-167 591.3 399 74.7
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 7.5e-167 590.9 358 81.0
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 9.9e-167 590.5 401 74.1
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.7e-166 589.7 375 77.1
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 2.2e-166 589.3 368 77.7
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 2.2e-166 589.3 362 78.5
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 2.9e-166 589.0 356 81.2
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 2.9e-166 589.0 362 79.8
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 4.9e-166 588.2 405 71.6
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 1.1e-165 587.0 359 78.6
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 1.1e-165 587.0 383 75.7
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 3.2e-165 585.5 343 82.2
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 3.2e-165 585.5 353 80.7
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 3.2e-165 585.5 343 82.8
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 7.1e-165 584.3 359 78.6
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 7.1e-165 584.3 362 79.3
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 2.7e-164 582.4 382 75.1
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 3.5e-164 582.0 360 80.0
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 7.8e-164 580.9 363 78.5
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 3.9e-163 578.6 386 75.9
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 3.9e-163 578.6 375 75.2
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 6.6e-163 577.8 378 77.8
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.1e-162 577.0 341 80.9
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.5e-162 576.6 408 71.1
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 4.3e-162 575.1 363 77.7
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 1.2e-159 567.0 339 80.2
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 3.2e-157 558.9 327 83.2
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 6.0e-156 554.7 390 70.0
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.3e-155 553.5 405 68.1
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 5.1e-155 551.6 391 69.8
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 5.1e-155 551.6 391 69.8
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 9.6e-154 547.4 397 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 2.8e-153 545.8 343 76.1
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 2.8e-153 545.8 349 74.8
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 4.7e-153 545.0 405 67.7
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 2.4e-152 542.7 405 67.2
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 4.0e-152 542.0 409 67.0
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 4.0e-152 542.0 359 76.9
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 2.0e-151 539.7 367 71.9
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 2.0e-151 539.7 362 74.0
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 2.6e-151 539.3 405 66.7
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 2.6e-151 539.3 339 77.9
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 3.4e-151 538.9 413 65.6
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 3.4e-151 538.9 367 71.9
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.4e-151 538.9 397 70.5
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 2.9e-150 535.8 361 73.1
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 6.4e-150 534.6 413 64.6
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 6.4e-150 534.6 343 75.2
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 2.4e-149 532.7 344 76.5
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.2e-149 532.3 382 68.1
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 2.7e-148 529.3 411 63.7
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 2.7e-148 529.3 366 72.1
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 2.3e-147 526.2 344 75.3
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 4.3e-146 521.9 357 70.6
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 9.6e-146 520.8 333 76.3
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 3.1e-144 515.8 359 69.4
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 2.6e-143 512.7 386 68.7
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 1.3e-142 510.4 377 67.6
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 2.2e-142 509.6 297 83.2
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 3.5e-140 502.3 367 68.7
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 1.1e-136 490.7 345 67.8
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 3.4e-135 485.7 358 70.9
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 3.4e-135 485.7 290 82.4
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.7e-134 483.4 345 70.1
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 1.2e-132 477.2 271 84.9
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.8e-128 463.4 353 64.3
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 2.0e-127 459.9 348 65.8
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 3.4e-127 459.1 381 64.0
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 8.4e-126 454.5 357 62.2
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 1.8e-123 446.8 383 62.4
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 5.3e-120 435.3 367 59.4
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 4.2e-117 425.6 252 81.0
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 2.4e-112 409.8 268 75.7
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.4e-99 367.5 210 84.8
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 3.6e-92 342.8 201 81.6
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 4.5e-87 325.9 210 77.6
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 4.1e-80 302.8 216 71.3
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 2.5e-77 293.5 205 67.3
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.3e-62 244.6 278 48.6
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 9.9e-50 201.8 414 33.3
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 2.1e-44 184.1 123 78.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.7e-41 174.5 115 72.2
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 1.9e-40 171.0 244 41.8
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 3.8e-33 146.7 99 68.7
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 7.8e-31 139.0 85 75.3
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 3.1e-27 127.1 74 81.1
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 1.4e-24 118.2 73 78.1
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 5.4e-24 116.3 163 43.6
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 6.5e-17 92.8 74 66.2
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.2e-16 90.5 88 54.5
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 9.3e-16 89.0 83 54.2
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 8.7e-14 82.4 44 81.8
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.4e-11 75.1 109 45.9
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 2.4e-11 74.3 100 39.0
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 1.1e-08 65.5 92 44.6
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.5e-08 64.3 44 68.2
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 1.6e-07 61.6 30 93.3


User provided reference genes

Program Settings