Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 7.9e-45 183.3 89 100.0
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 9.5e-14 80.1 41 90.2
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 6.1e-13 77.4 72 50.0
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 3.0e-12 75.1 40 80.0
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 4.0e-12 74.7 74 48.6
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 5.2e-12 74.3 74 48.6
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 6.8e-12 73.9 74 45.9
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 8.9e-12 73.6 41 78.0
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.2e-11 73.2 74 45.9
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 1.2e-11 73.2 41 75.6
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 1.5e-11 72.8 41 75.6
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 1.5e-11 72.8 41 75.6
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 2.0e-11 72.4 74 48.6
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 2.0e-11 72.4 41 73.2
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 2.0e-11 72.4 41 75.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 2.6e-11 72.0 74 48.6
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.6e-11 72.0 74 48.6
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.6e-11 72.0 41 75.6
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 3.4e-11 71.6 74 45.9
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 3.4e-11 71.6 74 44.6
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 3.4e-11 71.6 72 48.6
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 3.4e-11 71.6 41 75.6
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 4.4e-11 71.2 72 47.2
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 4.4e-11 71.2 41 73.2
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 4.4e-11 71.2 41 75.6
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 4.4e-11 71.2 71 49.3
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 4.4e-11 71.2 40 77.5
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 5.7e-11 70.9 41 75.6
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 5.7e-11 70.9 74 48.6
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 5.7e-11 70.9 74 45.9
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 5.7e-11 70.9 73 47.9
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 7.5e-11 70.5 41 73.2
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 7.5e-11 70.5 72 45.8
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 1.3e-10 69.7 74 45.9
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 1.3e-10 69.7 74 47.3
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 1.3e-10 69.7 41 68.3
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 1.7e-10 69.3 74 47.3
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 2.2e-10 68.9 40 75.0
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 2.2e-10 68.9 74 47.3
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.2e-10 68.9 40 72.5
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 2.2e-10 68.9 45 68.9
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 2.2e-10 68.9 40 75.0
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 2.2e-10 68.9 41 68.3
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 2.2e-10 68.9 71 47.9
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 2.8e-10 68.6 40 72.5
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 2.8e-10 68.6 40 72.5
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 3.7e-10 68.2 74 45.9
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 4.9e-10 67.8 41 70.7
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 4.9e-10 67.8 74 45.9
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 4.9e-10 67.8 45 66.7
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 6.3e-10 67.4 41 65.9
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 6.3e-10 67.4 73 42.5
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 6.3e-10 67.4 72 47.2
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 6.3e-10 67.4 73 49.3
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 6.3e-10 67.4 39 71.8
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 6.3e-10 67.4 40 72.5
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 6.3e-10 67.4 45 64.4
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 8.3e-10 67.0 74 43.2
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.3e-10 67.0 74 43.2
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.3e-10 67.0 74 43.2
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.3e-10 67.0 74 43.2
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 1.1e-09 66.6 43 62.8
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-09 66.6 74 43.2
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-09 66.6 74 43.2
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.1e-09 66.6 74 43.2
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 1.1e-09 66.6 45 66.7
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 1.1e-09 66.6 40 75.0
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 1.1e-09 66.6 40 72.5
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.1e-09 66.6 74 43.2
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 1.4e-09 66.2 45 66.7
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.4e-09 66.2 45 62.2
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.8e-09 65.9 72 44.4
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.8e-09 65.9 72 44.4
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 1.8e-09 65.9 74 43.2
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.4e-09 65.5 40 70.0
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.4e-09 65.5 40 70.0
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 2.4e-09 65.5 74 44.6
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 3.1e-09 65.1 45 62.2
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 3.1e-09 65.1 71 46.5
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 4.1e-09 64.7 39 76.9
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 4.1e-09 64.7 39 69.2
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 5.4e-09 64.3 37 75.7
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 5.4e-09 64.3 74 43.2
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 7.0e-09 63.9 72 44.4
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 7.0e-09 63.9 41 58.5
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 9.2e-09 63.5 39 71.8
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.2e-08 63.2 40 70.0
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 2.7e-08 62.0 74 37.8
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.5e-08 61.6 75 44.0
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 3.5e-08 61.6 74 41.9
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 3.5e-08 61.6 40 65.0
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 4.5e-08 61.2 72 41.7
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 4.5e-08 61.2 40 62.5
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 5.9e-08 60.8 72 40.3
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 2.9e-07 58.5 72 43.1
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 3.9e-07 58.2 45 51.1
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 5.0e-07 57.8 76 36.8
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 6.6e-07 57.4 38 63.2
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.5e-06 56.2 35 65.7
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.5e-06 56.2 35 65.7
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.5e-06 56.2 35 65.7
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.9e-06 55.8 35 62.9
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 1.9e-06 55.8 38 60.5
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.9e-06 55.8 38 60.5
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 3.3e-06 55.1 35 62.9
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 3.3e-06 55.1 73 41.1
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 4.3e-06 54.7 35 62.9
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 4.3e-06 54.7 35 62.9
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 4.3e-06 54.7 35 62.9
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 4.3e-06 54.7 35 62.9
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 4.3e-06 54.7 35 62.9
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 4.3e-06 54.7 35 62.9
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 4.3e-06 54.7 35 62.9
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 4.3e-06 54.7 74 37.8
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 5.6e-06 54.3 35 60.0
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 7.3e-06 53.9 74 40.5


User provided reference genes

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