Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 8.2e-196 686.8 331 100.0
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 2.2e-140 502.7 294 78.2
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 2.2e-140 502.7 295 78.6
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 3.7e-140 501.9 300 77.7
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 1.1e-139 500.4 294 77.9
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.1e-139 500.4 294 77.9
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 1.4e-139 500.0 294 78.2
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.9e-139 499.6 294 78.6
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.4e-139 499.2 294 78.9
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 3.2e-139 498.8 294 77.2
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 3.2e-139 498.8 294 77.9
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 4.1e-139 498.4 295 77.3
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 5.4e-139 498.0 294 78.9
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 7.1e-139 497.7 294 77.6
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 7.1e-139 497.7 294 78.6
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 9.2e-139 497.3 311 74.0
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 9.2e-139 497.3 294 76.2
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 9.2e-139 497.3 295 76.9
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 1.2e-138 496.9 294 78.2
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 1.6e-138 496.5 294 76.9
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 1.6e-138 496.5 294 78.9
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 2.1e-138 496.1 294 78.6
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 3.5e-138 495.4 294 77.2
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 3.5e-138 495.4 294 76.9
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 3.5e-138 495.4 293 78.2
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 3.5e-138 495.4 294 76.2
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 4.6e-138 495.0 294 78.2
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 4.6e-138 495.0 294 77.2
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 1.7e-137 493.0 294 76.5
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 3.0e-137 492.3 294 75.9
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 3.9e-137 491.9 290 77.2
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 5.1e-137 491.5 294 76.9
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 6.6e-137 491.1 294 76.2
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 6.6e-137 491.1 290 77.6
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 8.6e-137 490.7 287 77.7
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 1.1e-136 490.3 284 79.2
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 1.1e-136 490.3 302 75.5
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.9e-136 489.6 294 76.9
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 2.5e-136 489.2 294 76.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 4.3e-136 488.4 292 77.1
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 5.6e-136 488.0 294 76.9
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 5.6e-136 488.0 294 74.5
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 5.6e-136 488.0 295 76.3
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 9.6e-136 487.3 306 74.5
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 1.2e-135 486.9 294 76.5
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.6e-135 486.5 294 76.2
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.4e-134 483.4 281 78.6
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 1.8e-134 483.0 294 74.8
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 3.1e-134 482.3 293 77.1
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 4.0e-134 481.9 297 75.1
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 4.0e-134 481.9 293 76.1
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 4.0e-134 481.9 293 75.4
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 8.9e-134 480.7 281 79.0
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 8.9e-134 480.7 287 76.7
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 2.0e-133 479.6 294 75.9
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 2.0e-133 479.6 298 74.8
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.6e-133 479.2 281 78.6
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 3.4e-133 478.8 281 79.0
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 3.4e-133 478.8 293 75.4
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 7.6e-133 477.6 294 75.2
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 9.9e-133 477.2 294 75.2
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 9.9e-133 477.2 281 78.3
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 9.9e-133 477.2 292 74.7
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 9.9e-133 477.2 297 72.7
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 1.3e-132 476.9 306 73.5
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 3.8e-132 475.3 294 75.2
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.8e-132 475.3 281 77.2
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 8.4e-132 474.2 290 75.9
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 4.6e-130 468.4 293 73.7
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.0e-129 467.2 281 75.8
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.3e-129 466.8 281 76.2
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 3.0e-129 465.7 293 73.7
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 5.1e-129 464.9 281 74.4
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 6.6e-129 464.5 292 73.3
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 8.7e-129 464.2 294 71.8
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.1e-128 463.8 293 73.0
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 1.6e-127 459.9 281 75.4
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.1e-126 457.2 307 69.7
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.8e-126 456.4 281 75.8
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 4.0e-126 455.3 281 76.2
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 6.9e-126 454.5 279 74.9
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 9.0e-126 454.1 347 63.7
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 9.0e-126 454.1 299 72.2
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.2e-124 449.5 262 78.6
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.8e-124 448.7 266 78.9
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.1e-123 447.2 262 78.2
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 2.4e-123 446.0 293 70.3
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.2e-122 443.7 299 71.2
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.6e-122 443.4 262 78.2
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 6.0e-122 441.4 297 70.4
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 3.9e-121 438.7 254 79.9
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 6.6e-121 438.0 283 73.1
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.1e-118 430.6 294 67.0
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 4.0e-118 428.7 297 64.0
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.3e-113 413.7 249 76.3
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.8e-113 413.3 294 67.3
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 8.7e-113 411.0 286 65.0
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 6.2e-111 404.8 229 79.0
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 1.8e-105 386.7 258 69.8
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 6.3e-103 378.3 218 80.3
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 9.0e-102 374.4 281 64.4
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.7e-98 362.8 285 63.9
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 2.5e-96 356.3 253 68.4
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 5.7e-96 355.1 293 59.0
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 6.5e-92 341.7 216 72.2
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 4.2e-91 339.0 294 53.7
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.3e-87 327.4 300 52.0
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.2e-85 320.9 189 77.2
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 7.7e-77 291.6 317 46.4
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.2e-74 284.3 281 47.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.7e-71 273.9 302 48.7
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 3.1e-70 269.6 160 75.0
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 5.9e-69 265.4 188 65.4
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 2.7e-66 256.5 167 73.7
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.8e-65 251.5 163 71.2
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.2e-59 232.6 136 78.7
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 9.5e-59 231.5 149 70.5
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 2.3e-52 210.3 128 71.9
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 2.3e-49 200.3 181 56.4
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 8.9e-49 198.4 168 58.3
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 3.5e-45 186.4 108 78.7
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 5.6e-43 179.1 139 61.2
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 3.6e-42 176.4 104 77.9
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 4.7e-42 176.0 116 68.1
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 2.0e-40 170.6 97 77.3
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.7e-39 167.5 100 72.0
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.9e-38 164.1 172 52.9
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 6.6e-36 155.6 118 60.2
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 2.3e-33 147.1 107 60.7
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.9e-30 137.5 107 60.7
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 6.0e-29 132.5 98 66.3
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.7e-28 131.0 292 33.2
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.1e-22 111.7 117 52.1
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 3.2e-22 110.2 65 81.5
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.6e-21 107.8 307 28.7
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 2.1e-18 97.4 69 65.2
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 6.2e-18 95.9 69 65.2
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.4e-17 94.0 170 35.9
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 3.1e-17 93.6 61 77.0
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 2.7e-13 80.5 55 67.3
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 3.0e-12 77.0 163 30.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.1e-10 70.9 315 25.7
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 6.2e-10 69.3 42 71.4
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 6.2e-10 69.3 42 71.4
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 1.4e-09 68.2 42 69.0
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 9.3e-06 55.5 200 25.5


User provided reference genes

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