Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0697G207 Amborella trichopoda HOM05D004783 ORTHO05D005581 1.1e-53 213.0 107 100.0
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 4.9e-41 171.0 105 79.0
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 2.0e-34 149.1 105 66.7
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 2.0e-34 149.1 105 66.7
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 5.8e-34 147.5 105 66.7
Prupe.8G057300 Prunus persica HOM05D004783 ORTHO05D005581 4.9e-33 144.4 106 66.0
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 3.2e-32 141.7 105 63.8
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 5.4e-32 141.0 106 64.2
TAR622G0302 Trochodendron aralioides HOM05D004783 ORTHO05D005581 1.2e-31 139.8 106 63.2
TAR622G0815 Trochodendron aralioides HOM05D004783 ORTHO05D005581 1.2e-31 139.8 106 63.2
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 2.7e-31 138.7 106 63.2
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 4.6e-31 137.9 105 61.9
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 6.0e-31 137.5 105 61.9
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 6.0e-31 137.5 106 61.3
Rhsim01G0260800 Rhododendron simsii HOM05D004783 ORTHO05D005581 2.3e-30 135.6 102 62.7
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 3.0e-30 135.2 106 61.3
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 5.1e-30 134.4 105 61.0
MBI04_g31976_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 5.1e-30 134.4 105 61.0
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 6.6e-30 134.0 105 60.0
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 8.7e-30 133.7 105 58.1
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 1.1e-29 133.3 107 62.6
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 1.5e-29 132.9 105 59.0
Gohir.A05G337100 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.9e-29 132.5 106 59.4
Gorai.012G085500 Gossypium raimondii HOM05D004783 ORTHO05D005581 1.9e-29 132.5 106 58.5
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 2.5e-29 132.1 105 57.1
Gorai.003G087500 Gossypium raimondii HOM05D004783 ORTHO05D005581 2.5e-29 132.1 106 60.4
FvH4_3g29690 Fragaria vesca HOM05D004783 ORTHO05D005581 4.3e-29 131.3 105 60.0
FAN11G1373 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.3e-29 131.3 105 60.0
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.3e-29 131.3 105 60.0
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 5.6e-29 131.0 105 58.1
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 7.3e-29 130.6 105 60.0
FAN25G1477 Fragaria x ananassa HOM05D004783 ORTHO05D005581 7.3e-29 130.6 105 60.0
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 7.3e-29 130.6 106 57.5
Gohir.D04G075700 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.3e-28 129.8 106 57.5
FAN16G2696 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.6e-28 129.4 105 59.0
FAN26G1702 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.1e-28 129.0 105 59.0
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 3.6e-28 128.3 105 59.0
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 6.2e-28 127.5 105 59.0
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 1.1e-27 126.7 106 56.6
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 1.1e-27 126.7 106 58.5
RcHm_v2.0_Chr5g0055041 Rosa chinensis HOM05D004783 ORTHO05D005581 1.1e-27 126.7 106 56.6
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 1.4e-27 126.3 105 56.2
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 2.4e-27 125.6 105 56.2
FAN09G0480 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.1e-27 125.2 105 58.1
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 3.1e-27 125.2 106 57.5
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 4.0e-27 124.8 105 53.3
FAN18G1946 Fragaria x ananassa HOM05D004783 ORTHO05D005581 6.9e-27 124.0 105 57.1
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 2.0e-26 122.5 107 54.2
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 2.6e-26 122.1 105 53.3
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 4.5e-26 121.3 104 57.7
Ciclev10024609m.g Citrus clementina HOM05D004783 ORTHO05D005581 7.6e-26 120.6 106 53.8
FAN09G4036 Fragaria x ananassa HOM05D004783 ORTHO05D005581 7.6e-26 120.6 105 56.2
Cc06_g12410 Coffea canephora HOM05D004783 ORTHO05D005581 1.3e-25 119.8 105 55.2
Migut.J00915 Erythranthe guttata HOM05D004783 ORTHO05D005581 1.3e-25 119.8 105 53.3
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 2.2e-25 119.0 106 56.6
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 2.2e-25 119.0 105 56.2
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 2.9e-25 118.6 107 52.3
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 3.8e-25 118.2 105 53.3
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 3.8e-25 118.2 105 52.4
SEGI_13595 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 6.4e-25 117.5 105 52.4
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 1.1e-24 116.7 105 50.5
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 2.4e-24 115.5 105 49.5
ECA234G4279 Erigeron canadensis HOM05D004783 ORTHO05D005581 2.4e-24 115.5 105 51.4
Migut.L01576 Erythranthe guttata HOM05D004783 ORTHO05D005581 3.2e-24 115.2 105 50.5
Sed0014805 Sechium edule HOM05D004783 ORTHO05D005581 3.2e-24 115.2 106 53.8
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 4.2e-24 114.8 105 53.3
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 5.4e-24 114.4 105 52.4
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 5.4e-24 114.4 105 48.6
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 7.1e-24 114.0 105 48.6
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 7.1e-24 114.0 105 51.4
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 9.3e-24 113.6 107 54.2
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 9.3e-24 113.6 106 51.9
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 1.2e-23 113.2 105 48.6
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 1.2e-23 113.2 105 52.4
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 1.2e-23 113.2 105 52.4
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 2.1e-23 112.5 105 50.5
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 3.5e-23 111.7 105 48.6
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 4.6e-23 111.3 105 50.5
Ca_06171_v3 Cicer arietinum L. HOM05D004783 ORTHO05D005581 6.0e-23 110.9 105 53.3
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 7.9e-23 110.5 105 49.5
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 1.3e-22 109.8 107 51.4
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 1.3e-22 109.8 110 50.0
SHI25070 Sapria himalayana HOM05D004783 ORTHO05D005581 1.3e-22 109.8 106 49.1
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 2.3e-22 109.0 106 49.1
COL.COLO4_29903 Corchorus olitorius HOM05D004783 ORTHO05D005581 5.1e-22 107.8 109 51.4
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 5.1e-22 107.8 105 45.7
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 8.7e-22 107.1 107 50.5
Lj4g0006774 Lotus japonicus HOM05D004783 ORTHO05D005581 8.7e-22 107.1 105 47.6
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 4.3e-21 104.8 106 50.0
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 4.3e-21 104.8 107 52.3
Carub.0002s1809 Capsella rubella HOM05D004783 ORTHO05D005581 5.6e-21 104.4 102 52.9
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 1.6e-20 102.8 106 48.1
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 1.6e-20 102.8 104 48.1
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 3.7e-20 101.7 105 49.5
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 4.8e-20 101.3 104 50.0
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 6.2e-20 100.9 103 48.5
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 6.2e-20 100.9 81 56.8
SGA_v2.0_scaffold108G30882 Striga asiatica HOM05D004783 ORTHO05D005581 6.2e-20 100.9 95 47.4
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 6.2e-20 100.9 105 41.9
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 1.1e-19 100.1 105 48.6
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 1.4e-19 99.8 107 47.7
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 3.1e-19 98.6 105 46.7
Sabra01G0174200 Salix brachista HOM05D004783 ORTHO05D005581 4.0e-19 98.2 106 45.3
Potri.004G229100 Populus trichocarpa HOM05D004783 ORTHO05D005581 1.2e-18 96.7 106 46.2
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 4.5e-18 94.7 106 46.2
SGA_v2.0_scaffold80G25712 Striga asiatica HOM05D000897 ORTHO05D000716 7.6e-18 94.0 95 46.3
SGA_v2.0_scaffold9G04849 Striga asiatica HOM05D004783 ORTHO05D005581 7.6e-18 94.0 88 47.7
Psat0ss7919g0040 Pisum sativum HOM05D004783 ORTHO05D005581 9.9e-18 93.6 104 45.2
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 3.8e-17 91.7 108 45.4
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 3.8e-17 91.7 108 45.4
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 6.4e-17 90.9 108 45.4
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 6.4e-17 90.9 108 45.4
BolC6t39586H Brassica oleracea HOM05D004783 ORTHO05D005581 6.4e-17 90.9 108 45.4
Os02g0127600 Oryza sativa ssp. japonica HOM05D004783 ORTHO05D005581 1.9e-16 89.4 102 42.2
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 1.2e-15 86.7 104 44.2
arahy.Tifrunner.gnm1.ann1.U93Q4L Arachis hypogaea HOM05D004783 ORTHO05D005581 4.6e-15 84.7 85 50.6
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 6.0e-15 84.3 103 41.7
THA.LOC104800219 Tarenaya hassleriana HOM05D004783 ORTHO05D005581 6.7e-14 80.9 107 41.1
CDE12G0310 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 2.5e-13 79.0 69 52.2
arahy.Tifrunner.gnm1.ann1.7R7ZTH Arachis hypogaea HOM05D004783 ORTHO05D005581 3.3e-13 78.6 86 48.8
Zm00001eb231010 Zea mays HOM05D004783 ORTHO05D005581 1.3e-12 76.6 102 39.2
CDE01G0049 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 1.6e-12 76.3 71 53.5
Ah.05g173850 Amaranthus hybridus HOM05D004783 ORTHO05D005581 6.9e-11 70.9 66 47.0
arahy.Tifrunner.gnm1.ann1.Z9P42K Arachis hypogaea HOM05D004783 ORTHO05D005581 5.8e-10 67.8 69 47.8
arahy.Tifrunner.gnm1.ann1.I0AKGU Arachis hypogaea HOM05D004783 ORTHO05D005581 1.7e-09 66.2 69 46.4
COL.COLO4_04586 Corchorus olitorius HOM05D004783 ORTHO05D005581 2.2e-09 65.9 53 52.8
Potri.003G000601 Populus trichocarpa HOM05D004783 ORTHO05D005581 6.5e-09 64.3 85 38.8
arahy.Tifrunner.gnm1.ann1.EB1NGP Arachis hypogaea HOM05D004783 ORTHO05D005581 1.9e-08 62.8 69 44.9
HPP92_028041 Vanilla planifolia HOM05D004783 ORTHO05D005581 5.5e-08 61.2 86 43.0
Gohir.D03G072203 Gossypium hirsutum HOM05D004783 ORTHO05D005581 6.0e-07 57.8 36 69.4
Manes.01G175200 Manihot esculenta HOM05D004783 ORTHO05D005581 5.1e-06 54.7 36 69.4


User provided reference genes

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