Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0697G204 Amborella trichopoda HOM05D006694 ORTHO05D008240 2.1e-103 380.9 493 100.0
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 2.1e-21 108.6 121 47.9
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 3.6e-18 97.8 136 40.4
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 4.7e-18 97.4 103 52.4
ATR0737G136 Amborella trichopoda HOM05D006694 ORTHO05D008240 1.8e-17 95.5 78 60.3
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 3.1e-17 94.7 93 57.0
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 1.1e-14 86.3 126 39.7
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 7.1e-14 83.6 126 37.3
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 1.2e-13 82.8 126 38.1
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 2.7e-13 81.6 172 33.7
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 4.6e-13 80.9 147 35.4
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 4.6e-13 80.9 126 38.1
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 7.8e-13 80.1 115 36.5
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 1.0e-12 79.7 125 36.8
ATR0712G084 Amborella trichopoda HOM05D014578 ORTHO05D008240 2.3e-12 78.6 58 67.2
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 3.9e-12 77.8 153 32.7
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 5.1e-12 77.4 133 32.3
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 1.1e-11 76.3 151 33.8
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.9e-11 75.5 120 34.2
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 2.5e-11 75.1 165 28.5
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.3e-11 74.3 149 33.6
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.3e-11 74.3 149 33.6
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 7.3e-11 73.6 151 31.1
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 1.2e-10 72.8 159 30.2
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 1.2e-10 72.8 159 30.2
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.6e-10 72.4 126 33.3
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 2.8e-10 71.6 149 32.2
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 8.1e-10 70.1 154 31.2
COL.COLO4_34076 Corchorus olitorius HOM05D000162 ORTHO05D000090 1.4e-09 69.3 128 32.0
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.8e-09 68.9 145 30.3
ATR1128G031 Amborella trichopoda HOM05D006694 ORTHO05D008240 4.0e-09 67.8 157 33.1
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 4.0e-09 67.8 148 28.4
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 9.0e-09 66.6 119 35.3
CiPaw.08G119900 Carya illinoinensis HOM05D000162 ORTHO05D000090 9.0e-09 66.6 127 29.9
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 1.2e-08 66.2 124 31.5
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 1.2e-08 66.2 144 30.6
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 1.2e-08 66.2 154 35.1
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 1.5e-08 65.9 107 39.3
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 1.5e-08 65.9 137 26.3
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 2.0e-08 65.5 107 39.3
COL.COLO4_09887 Corchorus olitorius HOM05D000162 ORTHO05D000090 2.6e-08 65.1 178 30.3
Dinv06480 Davidia involucrata HOM05D000162 ORTHO05D000090 2.6e-08 65.1 150 28.7
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 3.4e-08 64.7 167 27.5
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 3.4e-08 64.7 124 29.8
Nn5g28361 Nelumbo nucifera HOM05D000162 ORTHO05D000090 3.4e-08 64.7 107 32.7
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 4.4e-08 64.3 78 37.2
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 5.8e-08 63.9 100 36.0
COL.COLO4_20303 Corchorus olitorius HOM05D000162 ORTHO05D000090 7.6e-08 63.5 155 29.7
COL.COLO4_20165 Corchorus olitorius HOM05D000162 ORTHO05D000090 9.9e-08 63.2 173 28.9
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 9.9e-08 63.2 103 35.0
SEGI_27186 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 1.3e-07 62.8 111 32.4
VMungo0464G0914 Vigna mungo HOM05D000162 ORTHO05D000090 1.7e-07 62.4 85 37.6
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 2.9e-07 61.6 107 36.4
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 2.9e-07 61.6 107 36.4
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 3.8e-07 61.2 119 34.5
QL04p064892 Quercus lobata HOM05D000162 ORTHO05D000090 3.8e-07 61.2 112 31.2
CiPaw.08G120800 Carya illinoinensis HOM05D000162 ORTHO05D000090 4.9e-07 60.8 151 27.2
Nn7g36861 Nelumbo nucifera HOM05D000162 ORTHO05D000090 4.9e-07 60.8 101 31.7
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 4.9e-07 60.8 157 27.4
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 4.9e-07 60.8 123 29.3
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 6.4e-07 60.5 102 27.5
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 6.4e-07 60.5 102 27.5
BolC8t52279H Brassica oleracea HOM05D000162 ORTHO05D000090 1.1e-06 59.7 103 31.1
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 1.1e-06 59.7 88 33.0
Lsat_1_v5_gn_2_107320 Lactuca sativa HOM05D002667 ORTHO05D002909 1.1e-06 59.7 99 32.3
SalBow4G2488 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.1e-06 59.7 93 32.3
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 1.4e-06 59.3 122 35.2
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 2.4e-06 58.5 85 40.0
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 2.4e-06 58.5 125 32.8
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 3.2e-06 58.2 106 31.1
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 3.2e-06 58.2 106 31.1
CiPaw.08G119800 Carya illinoinensis HOM05D000162 ORTHO05D000090 3.2e-06 58.2 111 35.1
Haze_21398 Corylus avellana HOM05D000162 ORTHO05D000090 3.2e-06 58.2 101 29.7
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 3.2e-06 58.2 112 33.0
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 4.2e-06 57.8 119 30.3
CiPaw.08G121200 Carya illinoinensis HOM05D000162 ORTHO05D000090 7.1e-06 57.0 141 28.4
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 7.1e-06 57.0 107 29.0
Potri.013G032600 Populus trichocarpa HOM05D000162 ORTHO05D000090 7.1e-06 57.0 103 31.1
Actinidia06229 Actinidia chinensis HOM05D000162 ORTHO05D000090 9.3e-06 56.6 104 31.7
Medtr6g078210 Medicago truncatula HOM05D000162 ORTHO05D000090 9.3e-06 56.6 98 34.7


User provided reference genes

Program Settings