Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0697G190 Amborella trichopoda HOM05D003692 ORTHO05D004295 6.7e-35 150.2 80 100.0
ATR0559G081 Amborella trichopoda HOM05D003692 ORTHO05D004295 2.5e-26 121.7 72 88.9
TAR369G0528 Trochodendron aralioides HOM05D003692 ORTHO05D004295 4.8e-25 117.5 72 84.7
TWI38G1706 Tripterygium wilfordii HOM05D003692 ORTHO05D004295 1.1e-24 116.3 72 81.9
Dinv35578 Davidia involucrata HOM05D003692 ORTHO05D004295 1.8e-24 115.5 72 81.9
Atru.chr8.2010 Acer truncatum HOM05D003692 ORTHO05D004295 2.4e-24 115.2 72 81.9
arahy.Tifrunner.gnm1.ann1.C3169U Arachis hypogaea HOM05D003692 ORTHO05D004295 3.1e-24 114.8 72 80.6
arahy.Tifrunner.gnm1.ann1.R5ZI8K Arachis hypogaea HOM05D003692 ORTHO05D004295 3.1e-24 114.8 72 80.6
CiPaw.09G195400 Carya illinoinensis HOM05D003692 ORTHO05D004295 3.1e-24 114.8 72 80.6
Glyma.03G070400 Glycine max HOM05D003692 ORTHO05D004295 4.1e-24 114.4 72 81.9
Ca_11500_v3 Cicer arietinum L. HOM05D003692 ORTHO05D004295 5.3e-24 114.0 72 80.6
PGR031G2878 Punica granatum HOM05D003692 ORTHO05D004295 5.3e-24 114.0 72 80.6
CSS0021952 Camellia sinensis var. sinensis HOM05D003692 ORTHO05D004295 6.9e-24 113.6 72 81.9
Ciclev10011911m.g Citrus clementina HOM05D003692 ORTHO05D004295 6.9e-24 113.6 72 80.6
Psat7g237280 Pisum sativum HOM05D003692 ORTHO05D004295 6.9e-24 113.6 72 81.9
Potri.006G088000 Populus trichocarpa HOM05D003692 ORTHO05D004295 6.9e-24 113.6 72 79.2
TAR560G0002 Trochodendron aralioides HOM05D003692 ORTHO05D004295 6.9e-24 113.6 72 81.9
TAR623G0629 Trochodendron aralioides HOM05D003692 ORTHO05D004295 6.9e-24 113.6 72 81.9
Peaxi162Scf00527g00735 Petunia axillaris HOM05D003692 ORTHO05D004295 9.1e-24 113.2 72 81.9
Prupe.6G258500 Prunus persica HOM05D003692 ORTHO05D004295 9.1e-24 113.2 72 79.2
CANSAT35G0909 Cannabis sativa HOM05D003692 ORTHO05D004295 1.2e-23 112.8 72 80.6
COL.COLO4_14767 Corchorus olitorius HOM05D003692 ORTHO05D004295 1.2e-23 112.8 72 79.2
Gohir.D04G122300 Gossypium hirsutum HOM05D003692 ORTHO05D004295 1.2e-23 112.8 72 80.6
Gorai.012G105200 Gossypium raimondii HOM05D003692 ORTHO05D004295 1.2e-23 112.8 72 80.6
Hma1.2p1_0877F.1_g231720 Hydrangea macrophylla HOM05D003692 ORTHO05D004295 1.2e-23 112.8 72 79.2
Nitab4.5_0003394g0020 Nicotiana tabacum HOM05D003692 ORTHO05D004295 1.2e-23 112.8 72 80.6
QL07p030140 Quercus lobata HOM05D003692 ORTHO05D004295 1.2e-23 112.8 72 80.6
QL07p030873 Quercus lobata HOM05D003692 ORTHO05D004295 1.2e-23 112.8 72 80.6
Lalb_Chr12g0209541 Lupinus albus HOM05D003692 ORTHO05D004295 1.5e-23 112.5 72 80.6
Glyma.01G103200 Glycine max HOM05D003692 ORTHO05D004295 2.0e-23 112.1 72 79.2
Aa31LG3G1840 Aethionema arabicum HOM05D003692 ORTHO05D004295 2.6e-23 111.7 72 77.8
CAN.G397.48 Capsicum annuum HOM05D003692 ORTHO05D004295 2.6e-23 111.7 72 79.2
Gohir.A04G083600 Gossypium hirsutum HOM05D003692 ORTHO05D004295 2.6e-23 111.7 72 79.2
Lalb_Chr07g0192991 Lupinus albus HOM05D003692 ORTHO05D004295 2.6e-23 111.7 72 79.2
Nitab4.5_0000705g0070 Nicotiana tabacum HOM05D003692 ORTHO05D004295 2.6e-23 111.7 72 80.6
CAN.G947.5 Capsicum annuum HOM05D003692 ORTHO05D004295 3.4e-23 111.3 72 79.2
Cfa017343 Carpinus fangiana HOM05D003692 ORTHO05D004295 3.4e-23 111.3 72 80.6
CDE07G1498 Ceratophyllum demersum HOM05D003692 ORTHO05D004295 3.4e-23 111.3 72 79.2
Haze_20825 Corylus avellana HOM05D003692 ORTHO05D004295 3.4e-23 111.3 72 80.6
Lj2A91G57 Lonicera japonica HOM05D003692 ORTHO05D004295 3.4e-23 111.3 79 74.7
MD04G1131900 Malus domestica HOM05D003692 ORTHO05D004295 3.4e-23 111.3 72 77.8
THA.LOC104816257 Tarenaya hassleriana HOM05D003692 ORTHO05D004295 3.4e-23 111.3 71 78.9
GSVIVG01034132001 Vitis vinifera HOM05D003692 ORTHO05D004295 3.4e-23 111.3 72 79.2
MSTRG.19074 Avicennia marina HOM05D003692 ORTHO05D004295 4.5e-23 110.9 72 77.8
Actinidia11270 Actinidia chinensis HOM05D003692 ORTHO05D004295 5.9e-23 110.5 72 81.9
Solyc09g011030.3 Solanum lycopersicum HOM05D003692 ORTHO05D004295 5.9e-23 110.5 72 80.6
Sopen09g005760 Solanum pennellii HOM05D003692 ORTHO05D004295 5.9e-23 110.5 72 80.6
PGSC0003DMG400008824 Solanum tuberosum HOM05D003692 ORTHO05D004295 5.9e-23 110.5 72 80.6
Actinidia26484 Actinidia chinensis HOM05D003692 ORTHO05D004295 7.7e-23 110.2 72 80.6
Thecc.05G036000 Theobroma cacao HOM05D003692 ORTHO05D004295 7.7e-23 110.2 72 79.2
VMungo0331G1001 Vigna mungo HOM05D003692 ORTHO05D004295 7.7e-23 110.2 72 79.2
Oeu001856.1 Olea europaea HOM05D003692 ORTHO05D004295 1.0e-22 109.8 72 77.8
Eucgr.A01287 Eucalyptus grandis HOM05D003692 ORTHO05D004295 1.3e-22 109.4 72 79.2
Lj3g0027938 Lotus japonicus HOM05D003692 ORTHO05D004295 1.3e-22 109.4 72 76.4
Potri.016G100500 Populus trichocarpa HOM05D003692 ORTHO05D004295 1.3e-22 109.4 71 76.1
Zm00001eb062800 Zea mays HOM05D003692 ORTHO05D004295 1.3e-22 109.4 72 76.4
DCAR_012112 Daucus carota HOM05D003692 ORTHO05D004295 1.7e-22 109.0 72 77.8
Manes.09G092685 Manihot esculenta HOM05D003692 ORTHO05D004295 1.7e-22 109.0 72 76.4
Oeu023073.1 Olea europaea HOM05D003692 ORTHO05D004295 1.7e-22 109.0 72 76.4
Os03g0822700 Oryza sativa ssp. japonica HOM05D003692 ORTHO05D004295 1.7e-22 109.0 72 76.4
Phvul.010G011500 Phaseolus vulgaris HOM05D003692 ORTHO05D004295 1.7e-22 109.0 72 77.8
HanXRQChr13g0406761 Helianthus annuus HOM05D003692 ORTHO05D004295 2.9e-22 108.2 72 79.2
SGA_v2.0_scaffold75G24963 Striga asiatica HOM05D003692 ORTHO05D004295 2.9e-22 108.2 72 75.0
Cpa.g.sc40.66 Carica papaya HOM05D003692 ORTHO05D004295 3.8e-22 107.8 72 77.8
MD12G1145000 Malus domestica HOM05D003692 ORTHO05D004295 3.8e-22 107.8 72 73.6
RcHm_v2.0_Chr7g0180681 Rosa chinensis HOM05D003692 ORTHO05D004295 3.8e-22 107.8 72 76.4
AUR62043522 Chenopodium quinoa HOM05D003692 ORTHO05D004295 5.0e-22 107.5 72 75.0
MELO3C003143.2 Cucumis melo HOM05D003692 ORTHO05D004295 5.0e-22 107.5 72 77.8
Duzib128G0550 Durio zibethinus HOM05D003692 ORTHO05D004295 5.0e-22 107.5 72 76.4
FvH4_6g11350 Fragaria vesca HOM05D003692 ORTHO05D004295 5.0e-22 107.5 72 77.8
FAN14G0506 Fragaria x ananassa HOM05D003692 ORTHO05D004295 5.0e-22 107.5 72 77.8
Nn2g13418 Nelumbo nucifera HOM05D003692 ORTHO05D004295 5.0e-22 107.5 72 76.4
SGA_v2.0_scaffold126G33762 Striga asiatica HOM05D003692 ORTHO05D004295 5.0e-22 107.5 72 73.6
vmacro20176 Vaccinium macrocarpon HOM05D003692 ORTHO05D004295 5.0e-22 107.5 72 76.4
FAN02G3395 Fragaria x ananassa HOM05D003692 ORTHO05D004295 6.5e-22 107.1 72 77.8
FAN05G1146 Fragaria x ananassa HOM05D003692 ORTHO05D004295 6.5e-22 107.1 72 77.8
Zm00001eb211620 Zea mays HOM05D003692 ORTHO05D004295 6.5e-22 107.1 72 75.0
MSTRG.10251 Avicennia marina HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
BcaB03g11607 Brassica carinata HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
BcaC05g29519 Brassica carinata HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
BcaC05g29662 Brassica carinata HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
A05p39620 Brassica napus HOM05D002396 ORTHO05D004295 1.1e-21 106.3 72 75.0
BolC5t34516H Brassica oleracea HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
BraA05t22745Z Brassica rapa HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
Carub.0003s0846 Capsella rubella HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 73.6
Thhalv10020978m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
FAN14G3612 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 76.4
Lsat_1_v5_gn_5_154881 Lactuca sativa HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
RcHm_v2.0_Chr3g0462931 Rosa chinensis HOM05D003692 ORTHO05D004295 1.1e-21 106.3 72 75.0
Ah.12g059970 Amaranthus hybridus HOM05D003692 ORTHO05D004295 1.4e-21 105.9 72 73.6
Aqoxy1G00886 Aquilegia oxysepala HOM05D003692 ORTHO05D004295 1.4e-21 105.9 72 75.0
Medtr4g021570 Medicago truncatula HOM05D003692 ORTHO05D004295 1.4e-21 105.9 72 73.6
CARHR083710 Cardamine hirsuta HOM05D003692 ORTHO05D004295 1.9e-21 105.5 72 73.6
Cc06_g02380 Coffea canephora HOM05D003692 ORTHO05D004295 1.9e-21 105.5 72 76.4
CsaV3_4G025150 Cucumis sativus L. HOM05D003692 ORTHO05D004295 1.9e-21 105.5 72 75.0
FAN09G2852 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.9e-21 105.5 72 76.4
C05p58660 Brassica napus HOM05D003692 ORTHO05D004295 2.5e-21 105.1 72 73.6
FAN08G2733 Fragaria x ananassa HOM05D003692 ORTHO05D004295 2.5e-21 105.1 72 75.0
Lj3A965G75 Lonicera japonica HOM05D003692 ORTHO05D004295 2.5e-21 105.1 72 76.4
Sp3g07730 Schrenkiella parvula HOM05D003692 ORTHO05D004295 2.5e-21 105.1 72 73.6
FvH4_5g15390 Fragaria vesca HOM05D003692 ORTHO05D004295 3.2e-21 104.8 72 75.0
FAN18G0330 Fragaria x ananassa HOM05D003692 ORTHO05D004295 3.2e-21 104.8 72 75.0
HanXRQChr01g0003311 Helianthus annuus HOM05D003692 ORTHO05D004295 3.2e-21 104.8 72 75.0
Sed0012536 Sechium edule HOM05D003692 ORTHO05D004295 3.2e-21 104.8 72 73.6
SEGI_14146 Sequoiadendron giganteum HOM05D003692 ORTHO05D004295 4.2e-21 104.4 72 72.2
TPR.G5579 Trifolium pratense HOM05D003692 ORTHO05D004295 4.2e-21 104.4 72 72.2
BcaC01g04230 Brassica carinata HOM05D003692 ORTHO05D004295 5.5e-21 104.0 72 72.2
BolC3t16634H Brassica oleracea HOM05D003692 ORTHO05D004295 5.5e-21 104.0 72 72.2
ECA248G3834 Erigeron canadensis HOM05D003692 ORTHO05D004295 5.5e-21 104.0 72 75.0
AT3G09350 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 9.4e-21 103.2 72 72.2
EL10As1g23134 Beta vulgaris HOM05D003692 ORTHO05D004295 9.4e-21 103.2 72 69.4
AL3G20500 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 1.2e-20 102.8 72 72.2
unitig_8.g4279 Utricularia gibba HOM05D003692 ORTHO05D004295 1.2e-20 102.8 72 73.6
C03p43660 Brassica napus HOM05D003692 ORTHO05D004295 2.1e-20 102.1 71 71.8
Carub.0005s2038 Capsella rubella HOM05D003692 ORTHO05D004295 2.1e-20 102.1 72 73.6
AL6G11380 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 2.7e-20 101.7 71 70.4
AT5G02150 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 2.7e-20 101.7 71 70.4
FAN13G1535 Fragaria x ananassa HOM05D003692 ORTHO05D004295 3.6e-20 101.3 72 73.6
Migut.J00308 Erythranthe guttata HOM05D003692 ORTHO05D004295 6.1e-20 100.5 71 70.4
PSO513G0124 Papaver somniferum HOM05D003692 ORTHO05D004295 6.1e-20 100.5 72 72.2
CARHR211210 Cardamine hirsuta HOM05D003692 ORTHO05D004295 7.9e-20 100.1 71 70.4
PSO478G2467 Papaver somniferum HOM05D003692 ORTHO05D004295 7.9e-20 100.1 72 70.8
A03p36010 Brassica napus HOM05D003692 ORTHO05D004295 1.0e-19 99.8 72 69.4
PSO339G0014 Papaver somniferum HOM05D003692 ORTHO05D004295 1.0e-19 99.8 72 70.8
Actinidia05324 Actinidia chinensis HOM05D003692 ORTHO05D004295 1.4e-19 99.4 72 72.2
AL5G34790 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 1.4e-19 99.4 72 70.8
BraA03t12773Z Brassica rapa HOM05D003692 ORTHO05D004295 1.8e-19 99.0 72 69.4
Pp3c16_19440 Physcomitrium patens HOM05D003692 ORTHO05D004295 3.0e-19 98.2 71 70.4
AagrBONN_evm.TU.Sc2ySwM_368.3385 Anthoceros agrestis HOM05D003692 ORTHO05D004295 3.9e-19 97.8 71 73.2
HPP92_006643 Vanilla planifolia HOM05D003692 ORTHO05D004295 3.9e-19 97.8 72 70.8
Carub.0006s0099 Capsella rubella HOM05D003692 ORTHO05D004295 5.1e-19 97.4 71 69.0
Thhalv10010482m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 1.5e-18 95.9 72 68.1
Mapoly0070s0083 Marchantia polymorpha HOM05D003692 ORTHO05D004295 1.5e-18 95.9 71 70.4
Pp3c5_26180 Physcomitrium patens HOM05D003692 ORTHO05D004295 2.0e-18 95.5 71 70.4
Sabra06G0067100 Salix brachista HOM05D003692 ORTHO05D004295 2.0e-18 95.5 98 56.1
SMO302G0018 Selaginella moellendorffii HOM05D003692 ORTHO05D004295 2.6e-18 95.1 72 65.3
CARHR163710 Cardamine hirsuta HOM05D003692 ORTHO05D004295 3.3e-18 94.7 72 68.1
A09p46790 Brassica napus HOM05D003692 ORTHO05D004295 4.4e-18 94.4 72 66.7
SGA_v2.0_scaffold94G28572 Striga asiatica HOM05D003692 ORTHO05D004295 4.4e-18 94.4 72 66.7
Sp5g08580 Schrenkiella parvula HOM05D003692 ORTHO05D004295 5.7e-18 94.0 72 66.7
BraA09t40139Z Brassica rapa HOM05D003692 ORTHO05D004295 7.4e-18 93.6 72 66.7
CBR_g66724 Chara braunii HOM05D003692 ORTHO05D004295 7.4e-18 93.6 71 69.0
ECA248G3804 Erigeron canadensis HOM05D003692 ORTHO05D004295 7.4e-18 93.6 72 70.8
AT3G53800 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 9.7e-18 93.2 69 71.0
AUR62042383 Chenopodium quinoa HOM05D003692 ORTHO05D004295 1.3e-17 92.8 99 54.5
Thhalv10014140m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 1.3e-17 92.8 71 66.2
BcaB01g00236 Brassica carinata HOM05D003692 ORTHO05D004295 1.7e-17 92.4 72 65.3
BcaC07g39737 Brassica carinata HOM05D003692 ORTHO05D004295 3.7e-17 91.3 72 63.9
C08p29100 Brassica napus HOM05D003692 ORTHO05D004295 3.7e-17 91.3 72 63.9
BolC8t50511H Brassica oleracea HOM05D003692 ORTHO05D004295 3.7e-17 91.3 72 63.9
BcaB04g18532 Brassica carinata HOM05D003692 ORTHO05D004295 1.1e-16 89.7 72 68.1
THA.LOC104823413 Tarenaya hassleriana HOM05D003692 ORTHO05D004295 4.1e-16 87.8 72 61.1
ClCG04G008060 Citrullus lanatus HOM05D003692 ORTHO05D004295 5.9e-15 84.0 122 45.1
Rhsim05G0194700 Rhododendron simsii HOM05D003692 ORTHO05D004295 1.3e-14 82.8 123 44.7
Oeu006893.1 Olea europaea HOM05D003692 ORTHO05D004295 6.5e-14 80.5 69 60.9
Os03g0271400 Oryza sativa ssp. japonica HOM05D003692 ORTHO05D004295 6.5e-14 80.5 72 58.3
MBI05_g35626_MAGBIO Magnolia biondii HOM05D003692 ORTHO05D004295 4.2e-13 77.8 72 63.9
Hund07758 Selenicereus undatus HOM05D003692 ORTHO05D004295 9.4e-13 76.6 59 67.8
Hund29077 Selenicereus undatus HOM05D003692 ORTHO05D004295 1.2e-12 76.3 57 68.4
Sp6g40290 Schrenkiella parvula HOM05D003692 ORTHO05D004295 1.8e-11 72.4 56 64.3
ECA248G3146 Erigeron canadensis HOM05D003692 ORTHO05D004295 2.3e-11 72.0 57 66.7
C07p37320 Brassica napus HOM05D003692 ORTHO05D004295 1.3e-09 66.2 61 55.7


User provided reference genes

Program Settings