Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 1.7e-57 225.7 106 100.0
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 9.2e-24 113.6 101 52.5
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 2.7e-23 112.1 106 49.1
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 2.7e-23 112.1 101 51.5
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 7.8e-23 110.5 105 50.5
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 1.0e-22 110.2 100 51.0
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 1.0e-22 110.2 101 52.5
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 1.3e-22 109.8 104 51.9
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 3.9e-22 108.2 101 48.5
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 3.9e-22 108.2 99 49.5
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 3.9e-22 108.2 103 51.5
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 8.6e-22 107.1 99 46.5
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 8.6e-22 107.1 101 47.5
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 8.6e-22 107.1 99 47.5
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 8.6e-22 107.1 101 52.5
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 1.1e-21 106.7 101 46.5
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 1.5e-21 106.3 99 46.5
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 2.5e-21 105.5 101 46.5
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 2.5e-21 105.5 103 48.5
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 3.3e-21 105.1 100 48.0
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 3.3e-21 105.1 100 49.0
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 3.3e-21 105.1 104 48.1
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 4.3e-21 104.8 99 46.5
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 5.6e-21 104.4 100 48.0
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 5.6e-21 104.4 101 48.5
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 7.3e-21 104.0 110 42.7
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 7.3e-21 104.0 100 45.0
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 9.5e-21 103.6 100 49.0
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 9.5e-21 103.6 99 47.5
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 9.5e-21 103.6 100 50.0
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.2e-20 103.2 96 51.0
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 2.1e-20 102.4 102 46.1
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 2.1e-20 102.4 100 45.0
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 2.1e-20 102.4 100 45.0
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 2.8e-20 102.1 101 48.5
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 4.7e-20 101.3 100 44.0
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 4.7e-20 101.3 102 48.0
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 6.2e-20 100.9 100 43.0
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 6.2e-20 100.9 99 44.4
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 8.1e-20 100.5 100 44.0
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 8.1e-20 100.5 101 48.5
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 8.1e-20 100.5 100 44.0
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 8.1e-20 100.5 103 42.7
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 8.1e-20 100.5 100 49.0
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 1.1e-19 100.1 101 42.6
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 1.4e-19 99.8 101 45.5
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 1.4e-19 99.8 100 43.0
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 1.8e-19 99.4 100 47.0
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 1.8e-19 99.4 99 45.5
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 1.8e-19 99.4 99 45.5
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 1.8e-19 99.4 99 45.5
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 1.8e-19 99.4 100 49.0
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 1.8e-19 99.4 99 45.5
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 2.3e-19 99.0 102 46.1
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 2.3e-19 99.0 100 48.0
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 3.1e-19 98.6 102 45.1
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 3.1e-19 98.6 100 43.0
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 3.1e-19 98.6 100 42.0
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 4.0e-19 98.2 104 42.3
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 5.2e-19 97.8 99 44.4
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 5.2e-19 97.8 103 49.5
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 5.2e-19 97.8 99 43.4
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 5.2e-19 97.8 99 43.4
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 6.8e-19 97.4 126 42.9
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 6.8e-19 97.4 100 46.0
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 6.8e-19 97.4 100 46.0
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 8.9e-19 97.1 102 48.0
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 1.5e-18 96.3 101 47.5
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 1.5e-18 96.3 99 46.5
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 2.0e-18 95.9 101 44.6
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 2.6e-18 95.5 99 45.5
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 2.6e-18 95.5 103 47.6
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 2.6e-18 95.5 99 42.4
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 3.4e-18 95.1 101 41.6
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.4e-18 95.1 110 45.5
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-18 94.7 103 42.7
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 4.4e-18 94.7 99 49.5
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 4.4e-18 94.7 102 44.1
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 7.5e-18 94.0 102 45.1
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 1.3e-17 93.2 100 42.0
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 1.3e-17 93.2 101 45.5
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 1.3e-17 93.2 102 44.1
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 1.7e-17 92.8 100 43.0
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 1.7e-17 92.8 99 43.4
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 2.2e-17 92.4 99 44.4
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 2.9e-17 92.0 101 44.6
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 3.7e-17 91.7 100 43.0
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 3.7e-17 91.7 100 42.0
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 4.9e-17 91.3 100 44.0
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 6.4e-17 90.9 101 42.6
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 8.3e-17 90.5 98 40.8
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 8.3e-17 90.5 95 41.1
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 1.4e-16 89.7 100 43.0
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 1.4e-16 89.7 99 41.4
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 1.4e-16 89.7 99 43.4
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.9e-16 89.4 98 40.8
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 1.9e-16 89.4 102 42.2
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 3.2e-16 88.6 86 50.0
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 4.1e-16 88.2 100 42.0
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 4.1e-16 88.2 100 42.0
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 7.1e-16 87.4 99 41.4
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 9.2e-16 87.0 101 43.6
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 6.0e-15 84.3 105 41.0
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 7.8e-15 84.0 99 39.4
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 1.0e-14 83.6 120 37.5
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 1.7e-14 82.8 100 43.0
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 2.3e-14 82.4 84 42.9
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.9e-14 81.6 58 62.1
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 3.9e-14 81.6 95 40.0
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 3.3e-13 78.6 96 37.5
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 5.6e-13 77.8 108 38.0
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 1.2e-12 76.6 101 37.6
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 2.1e-12 75.9 104 39.4
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 1.4e-11 73.2 53 54.7
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 5.8e-10 67.8 78 41.0


User provided reference genes

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