Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 6.4e-232 807.4 508 100.0
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.0e-51 208.8 494 42.9
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 1.1e-50 205.3 267 56.2
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.0e-48 198.7 384 41.7
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 2.2e-46 191.0 494 41.1
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.8e-46 190.7 459 42.3
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 8.3e-46 189.1 297 47.1
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.2e-44 185.3 319 47.6
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 3.5e-44 183.7 319 44.5
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 3.5e-44 183.7 429 37.5
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 7.7e-44 182.6 282 51.8
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 1.7e-43 181.4 392 42.9
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.7e-43 181.4 613 31.8
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.9e-43 180.6 533 33.6
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 6.5e-43 179.5 317 37.5
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 1.9e-42 177.9 296 41.6
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.5e-42 177.6 460 40.7
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 1.2e-41 175.3 286 47.9
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.7e-41 174.1 280 44.3
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 3.0e-40 170.6 423 37.1
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 4.0e-40 170.2 337 43.3
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 5.2e-40 169.9 289 42.6
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 6.8e-40 169.5 414 37.7
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 1.5e-39 168.3 163 59.5
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 3.4e-39 167.2 310 43.2
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 9.8e-39 165.6 437 35.0
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.8e-38 164.1 496 34.3
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 3.7e-38 163.7 379 39.3
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 4.9e-38 163.3 350 39.7
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 4.9e-38 163.3 349 40.7
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.3e-38 162.5 267 47.9
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 8.3e-38 162.5 350 39.4
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 1.4e-37 161.8 294 45.6
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 1.4e-37 161.8 335 44.2
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.4e-37 161.0 341 45.2
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 1.2e-36 158.7 356 41.0
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 1.6e-36 158.3 321 46.4
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.6e-36 158.3 286 41.3
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 2.0e-36 157.9 458 39.1
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 3.5e-36 157.1 490 36.3
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 1.3e-35 155.2 287 44.9
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.3e-35 154.5 364 40.7
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.8e-35 153.7 348 40.2
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 5.0e-35 153.3 356 38.5
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 6.6e-35 152.9 395 39.7
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 4.2e-34 150.2 395 36.7
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 5.6e-34 149.8 351 41.9
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 1.6e-33 148.3 220 49.5
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 2.1e-33 147.9 347 34.6
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 6.1e-33 146.4 188 47.9
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 6.1e-33 146.4 362 43.9
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 8.0e-33 146.0 418 39.0
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 8.0e-33 146.0 358 36.3
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 8.0e-33 146.0 171 54.4
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.0e-32 145.6 163 55.8
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.8e-32 144.8 186 49.5
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 1.8e-32 144.8 341 45.2
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 5.2e-32 143.3 246 51.6
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 5.2e-32 143.3 356 43.3
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 6.8e-32 142.9 358 36.0
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 1.2e-31 142.1 360 42.8
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.0e-31 141.4 307 35.5
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 5.7e-31 139.8 392 33.9
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 5.7e-31 139.8 199 47.7
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 5.7e-31 139.8 402 36.1
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 9.8e-31 139.0 395 34.4
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 2.9e-30 137.5 197 42.1
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 3.7e-30 137.1 341 38.4
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 3.7e-30 137.1 504 35.3
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 4.9e-30 136.7 369 37.9
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 6.4e-30 136.3 331 39.6
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 8.3e-30 136.0 371 37.5
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 1.1e-29 135.6 276 44.6
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 1.8e-29 134.8 176 45.5
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 1.8e-29 134.8 176 45.5
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.8e-29 134.8 194 37.6
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 2.4e-29 134.4 202 42.1
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 2.4e-29 134.4 184 44.6
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.4e-29 134.4 315 34.9
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 3.2e-29 134.0 176 44.9
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 3.2e-29 134.0 176 44.9
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 4.1e-29 133.7 229 48.0
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 4.1e-29 133.7 328 36.6
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 5.4e-29 133.3 302 34.1
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 9.2e-29 132.5 176 44.3
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 9.2e-29 132.5 403 31.8
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 2.0e-28 131.3 297 36.4
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.7e-28 131.0 190 45.8
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.5e-28 130.6 299 33.8
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 5.9e-28 129.8 195 47.2
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 2.3e-27 127.9 495 34.7
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 2.3e-27 127.9 382 42.9
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 3.9e-27 127.1 200 42.0
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.0e-27 126.7 495 34.5
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 6.6e-27 126.3 292 32.2
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 6.6e-27 126.3 183 43.7
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 1.1e-26 125.6 307 32.9
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.5e-26 125.2 161 50.3
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.5e-26 124.4 496 33.7
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 4.3e-26 123.6 420 33.3
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 7.3e-26 122.9 299 32.8
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 7.3e-26 122.9 287 43.2
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 9.5e-26 122.5 308 40.9
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 2.8e-25 120.9 159 43.4
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 2.8e-25 120.9 345 41.2
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 8.0e-25 119.4 187 41.2
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 8.0e-25 119.4 172 39.5
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 5.2e-24 116.7 405 36.8
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 6.8e-24 116.3 227 34.4
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.5e-23 115.2 314 34.1
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.5e-23 115.2 267 45.7
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.0e-23 114.8 250 34.8
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.6e-23 114.4 368 28.8
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 3.4e-23 114.0 364 40.4
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.4e-23 113.6 157 37.6
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 2.9e-22 110.9 311 38.3
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.9e-22 110.2 151 49.7
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 4.9e-22 110.2 151 49.7
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.4e-21 107.8 159 40.3
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 5.4e-21 106.7 201 38.3
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 5.4e-21 106.7 203 36.9
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 7.0e-21 106.3 198 32.8
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 7.0e-21 106.3 157 49.7
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 9.2e-21 105.9 165 34.5
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 1.6e-20 105.1 334 30.8
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 4.6e-20 103.6 282 35.8
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 1.0e-19 102.4 362 38.7
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.0e-19 102.4 202 37.6
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.0e-19 102.4 283 35.3
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.0e-19 102.4 201 39.8
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.0e-19 100.9 204 29.9
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 3.9e-19 100.5 116 53.4
Os11g0573200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 5.0e-19 100.1 203 43.8
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 6.6e-19 99.8 95 63.2
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.5e-18 97.8 138 48.6
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 3.3e-18 97.4 289 42.2
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 5.6e-18 96.7 117 53.0
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 9.5e-18 95.9 251 31.5
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.2e-17 95.5 202 33.7
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 1.2e-17 95.5 242 37.2
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 3.6e-17 94.0 167 40.7
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 8.1e-17 92.8 209 34.0
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.8e-16 91.7 188 29.8
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 3.1e-16 90.9 212 32.1
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 8.9e-16 89.4 531 28.2
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.6e-15 87.8 213 37.6
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 5.8e-15 86.7 200 28.5
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 5.8e-15 86.7 124 50.0
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 7.5e-15 86.3 367 29.7
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 1.4e-13 82.0 195 29.7
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.4e-13 82.0 178 45.5
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 2.4e-13 81.3 304 25.3
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.2e-13 80.9 372 31.7
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 4.1e-13 80.5 187 27.8
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 4.1e-13 80.5 193 28.0
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 4.1e-13 80.5 193 28.0
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 1.2e-12 79.0 160 30.0
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 1.2e-12 79.0 171 29.8
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 3.5e-12 77.4 191 27.2
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 3.5e-12 77.4 191 27.2
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 1.3e-11 75.5 116 37.1
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 3.0e-11 74.3 122 34.4
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 5.1e-11 73.6 180 42.2
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 8.6e-11 72.8 191 26.2
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 8.6e-11 72.8 172 25.6
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.1e-10 72.4 156 33.3
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 1.5e-10 72.0 154 42.2
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 4.3e-10 70.5 215 33.5
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 1.2e-09 68.9 96 47.9
AUR62038407 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.7e-09 67.0 172 27.3
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 4.7e-09 67.0 89 42.7
Oeu047795.1 Olea europaea HOM05D003229 ORTHO05D003835 6.2e-09 66.6 53 49.1
Nitab4.5_0000117g0180 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.8e-08 65.1 75 37.3
Nitab4.5_0002595g0030 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.8e-08 65.1 75 37.3
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 1.8e-08 65.1 181 25.4
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 6.8e-08 63.2 127 30.7
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.4e-07 60.8 124 28.2
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 9.9e-07 59.3 83 34.9
Solyc01g056760.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 9.9e-07 59.3 83 33.7


User provided reference genes

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