Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G447 Amborella trichopoda HOM05D006337 ORTHO05D008050 0.0e+00 1140.2 591 100.0
MBI19_g03243_MAGBIO Magnolia biondii HOM05D006337 ORTHO05D008050 1.8e-230 802.7 543 77.2
TAR362G0469 Trochodendron aralioides HOM05D006337 ORTHO05D008050 1.6e-221 773.1 590 70.8
Nn3g21731 Nelumbo nucifera HOM05D006337 ORTHO05D008050 4.2e-211 738.4 593 68.1
PSO761G0398 Papaver somniferum HOM05D006337 ORTHO05D008050 1.1e-206 723.8 601 67.1
Nn4g25566 Nelumbo nucifera HOM05D006337 ORTHO05D008050 2.4e-206 722.6 592 65.9
PSO210G5840 Papaver somniferum HOM05D006337 ORTHO05D008050 3.5e-205 718.8 597 66.8
Lj5C328G3 Lonicera japonica HOM05D006337 ORTHO05D008050 3.9e-204 715.3 557 68.2
Aqoxy5G02944 Aquilegia oxysepala HOM05D006337 ORTHO05D008050 1.9e-203 713.0 572 68.4
PGR083G2894 Punica granatum HOM05D006337 ORTHO05D008050 2.1e-202 709.5 575 66.4
Eucgr.L00261 Eucalyptus grandis HOM05D006337 ORTHO05D008050 2.8e-202 709.1 584 66.4
Cpa.g.sc48.168 Carica papaya HOM05D006337 ORTHO05D008050 1.8e-201 706.4 575 65.4
Nitab4.5_0001338g0110 Nicotiana tabacum HOM05D006337 ORTHO05D008050 2.3e-201 706.1 575 65.2
CSS0010424 Camellia sinensis var. sinensis HOM05D006337 ORTHO05D008050 5.2e-201 704.9 589 64.3
QL03p014086 Quercus lobata HOM05D006337 ORTHO05D008050 1.3e-199 700.3 589 63.7
CANSAT54G1309 Cannabis sativa HOM05D006337 ORTHO05D008050 1.7e-199 699.9 562 65.1
Dinv30899 Davidia involucrata HOM05D006337 ORTHO05D008050 2.9e-199 699.1 563 66.1
Potri.005G012900 Populus trichocarpa HOM05D006337 ORTHO05D008050 4.9e-199 698.4 571 66.2
Prupe.6G312300 Prunus persica HOM05D006337 ORTHO05D008050 4.9e-199 698.4 570 65.3
Sc09g0002620 Simmondsia chinensis HOM05D006337 ORTHO05D008050 6.4e-199 698.0 594 64.0
MELO3C004177.2 Cucumis melo HOM05D006337 ORTHO05D008050 8.3e-199 697.6 560 66.1
MD04G1193000 Malus domestica HOM05D006337 ORTHO05D008050 1.1e-198 697.2 573 65.6
GSVIVG01031249001 Vitis vinifera HOM05D006337 ORTHO05D008050 7.0e-198 694.5 541 68.2
Migut.B00957 Erythranthe guttata HOM05D006337 ORTHO05D008050 9.2e-198 694.1 591 64.1
MD12G1205200 Malus domestica HOM05D006337 ORTHO05D008050 9.2e-198 694.1 589 64.7
Lsat_1_v5_gn_8_116121 Lactuca sativa HOM05D006337 ORTHO05D008050 1.2e-197 693.7 561 66.8
Hma1.2p1_0008F-1.1_g005550 Hydrangea macrophylla HOM05D006337 ORTHO05D008050 2.7e-197 692.6 556 66.4
Manes.08G110700 Manihot esculenta HOM05D006337 ORTHO05D008050 6.0e-197 691.4 593 64.6
Cc02_g35170 Coffea canephora HOM05D006337 ORTHO05D008050 1.0e-196 690.6 598 62.4
FAN02G2852 Fragaria x ananassa HOM05D006337 ORTHO05D008050 1.0e-196 690.6 527 68.7
PGSC0003DMG400002762 Solanum tuberosum HOM05D006337 ORTHO05D008050 2.3e-196 689.5 541 65.6
RcHm_v2.0_Chr3g0457221 Rosa chinensis HOM05D006337 ORTHO05D008050 3.0e-196 689.1 536 67.9
Thecc.05G323900 Theobroma cacao HOM05D006337 ORTHO05D008050 3.0e-196 689.1 567 66.0
Haze_04055 Corylus avellana HOM05D006337 ORTHO05D008050 8.6e-196 687.6 584 63.9
Peaxi162Scf01061g00122 Petunia axillaris HOM05D006337 ORTHO05D008050 8.6e-196 687.6 537 65.9
CsaV3_2G007160 Cucumis sativus L. HOM05D006337 ORTHO05D008050 1.5e-195 686.8 560 66.1
CAN.G1076.22 Capsicum annuum HOM05D006337 ORTHO05D008050 4.3e-195 685.3 538 64.9
Gohir.D13G115300 Gossypium hirsutum HOM05D006337 ORTHO05D008050 5.6e-195 684.9 535 67.5
Solyc01g100610.3 Solanum lycopersicum HOM05D006337 ORTHO05D008050 5.6e-195 684.9 541 65.6
FvH4_6g07510 Fragaria vesca HOM05D006337 ORTHO05D008050 1.2e-194 683.7 527 68.7
FAN14G3073 Fragaria x ananassa HOM05D006337 ORTHO05D008050 1.2e-194 683.7 527 68.7
Gohir.A08G205300 Gossypium hirsutum HOM05D006337 ORTHO05D008050 1.2e-194 683.7 565 65.0
Gorai.013G129700 Gossypium raimondii HOM05D006337 ORTHO05D008050 1.2e-194 683.7 535 67.5
Gorai.004G236200 Gossypium raimondii HOM05D006337 ORTHO05D008050 1.6e-194 683.3 565 64.8
FAN09G0993 Fragaria x ananassa HOM05D006337 ORTHO05D008050 2.8e-194 682.6 527 68.5
Sopen01g044110 Solanum pennellii HOM05D006337 ORTHO05D008050 2.8e-194 682.6 588 62.2
Gohir.D08G222400 Gossypium hirsutum HOM05D006337 ORTHO05D008050 3.6e-194 682.2 565 64.6
Sed0025162 Sechium edule HOM05D006337 ORTHO05D008050 8.1e-194 681.0 539 66.4
Ciclev10000649m.g Citrus clementina HOM05D006337 ORTHO05D008050 1.4e-193 680.2 565 64.2
Atru.chr2.356 Acer truncatum HOM05D006337 ORTHO05D008050 1.8e-193 679.9 574 63.9
AUR62006741 Chenopodium quinoa HOM05D006337 ORTHO05D008050 2.3e-193 679.5 594 61.3
TWI56G1055 Tripterygium wilfordii HOM05D006337 ORTHO05D008050 3.1e-193 679.1 527 68.5
ClCG02G014850 Citrullus lanatus HOM05D006337 ORTHO05D008050 5.2e-193 678.3 590 62.5
SalBow3G0030 Salvia bowleyana HOM05D006337 ORTHO05D008050 8.9e-193 677.6 538 66.2
HanXRQChr09g0258701 Helianthus annuus HOM05D006337 ORTHO05D008050 1.2e-192 677.2 570 64.6
Gohir.A13G112400 Gossypium hirsutum HOM05D006337 ORTHO05D008050 1.5e-192 676.8 537 67.2
ECA232G4422 Erigeron canadensis HOM05D006337 ORTHO05D008050 1.3e-191 673.7 562 65.5
SEGI_32498 Sequoiadendron giganteum HOM05D006337 ORTHO05D008050 1.7e-191 673.3 597 63.1
Ah.03g134550 Amaranthus hybridus HOM05D006337 ORTHO05D008050 2.2e-191 672.9 528 67.0
AUR62000385 Chenopodium quinoa HOM05D006337 ORTHO05D008050 4.9e-191 671.8 586 61.3
COL.COLO4_05544 Corchorus olitorius HOM05D006337 ORTHO05D008050 6.4e-191 671.4 568 64.4
SGA_v2.0_scaffold4G01972 Striga asiatica HOM05D006337 ORTHO05D008050 1.4e-190 670.2 588 62.6
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.9e-190 669.8 564 64.0
EL10Ac4g09464 Beta vulgaris HOM05D006337 ORTHO05D008050 9.2e-190 667.5 621 60.5
Nitab4.5_0004525g0030 Nicotiana tabacum HOM05D006337 ORTHO05D008050 9.2e-190 667.5 585 62.4
Sed0024424 Sechium edule HOM05D006337 ORTHO05D008050 9.2e-190 667.5 547 65.6
THA.LOC104821740 Tarenaya hassleriana HOM05D006337 ORTHO05D008050 2.7e-189 666.0 590 62.0
arahy.Tifrunner.gnm1.ann1.JG44AF Arachis hypogaea HOM05D006337 ORTHO05D008050 3.5e-189 665.6 568 63.2
arahy.Tifrunner.gnm1.ann1.T92ZT6 Arachis hypogaea HOM05D006337 ORTHO05D008050 2.3e-188 662.9 568 63.2
THA.LOC104802775 Tarenaya hassleriana HOM05D006337 ORTHO05D008050 3.9e-188 662.1 546 64.3
Sabra05G0020500 Salix brachista HOM05D006337 ORTHO05D008050 8.6e-188 661.0 631 59.7
Sabra05G0009100 Salix brachista HOM05D006337 ORTHO05D008050 1.9e-187 659.8 622 60.1
Lj5g0023698 Lotus japonicus HOM05D006337 ORTHO05D008050 3.3e-187 659.1 557 63.6
Thhalv10003867m.g Eutrema salsugineum HOM05D006337 ORTHO05D008050 2.1e-186 656.4 543 64.6
Glyma.10G146600 Glycine max HOM05D006337 ORTHO05D008050 3.1e-185 652.5 539 64.4
TPR.G2638 Trifolium pratense HOM05D006337 ORTHO05D008050 1.2e-184 650.6 559 63.1
Oeu052934.2 Olea europaea HOM05D006337 ORTHO05D008050 1.5e-184 650.2 471 73.5
CARHR186710 Cardamine hirsuta HOM05D006337 ORTHO05D008050 2.6e-184 649.4 572 62.9
Phvul.007G201800 Phaseolus vulgaris HOM05D006337 ORTHO05D008050 2.6e-184 649.4 564 62.1
DCAR_005423 Daucus carota HOM05D006337 ORTHO05D008050 5.8e-184 648.3 534 64.8
HanXRQChr15g0486571 Helianthus annuus HOM05D006337 ORTHO05D008050 7.6e-184 647.9 541 65.2
Sp2g21170 Schrenkiella parvula HOM05D006337 ORTHO05D008050 9.9e-184 647.5 539 64.0
Lalb_Chr06g0167461 Lupinus albus HOM05D006337 ORTHO05D008050 1.3e-183 647.1 560 60.9
Psat6g152760 Pisum sativum HOM05D006337 ORTHO05D008050 1.3e-183 647.1 574 61.0
Ca_10177_v3 Cicer arietinum L. HOM05D006337 ORTHO05D008050 1.7e-183 646.7 577 61.2
Carub.0006s2448 Capsella rubella HOM05D006337 ORTHO05D008050 2.2e-183 646.4 539 64.0
AT5G26820 Arabidopsis thaliana HOM05D006337 ORTHO05D008050 7.1e-182 641.3 559 62.6
AL6G38700 Arabidopsis lyrata HOM05D006337 ORTHO05D008050 7.8e-181 637.9 592 59.6
VMungo0720G2751 Vigna mungo HOM05D006337 ORTHO05D008050 7.8e-181 637.9 539 62.7
C02p58590 Brassica napus HOM05D006337 ORTHO05D008050 3.0e-180 636.0 542 64.2
BcaC03g17830 Brassica carinata HOM05D006337 ORTHO05D008050 3.9e-180 635.6 542 64.0
A02p39000 Brassica napus HOM05D006337 ORTHO05D008050 8.6e-180 634.4 544 63.6
BolC2t11920H Brassica oleracea HOM05D006337 ORTHO05D008050 8.6e-180 634.4 542 63.8
BraA02t08870Z Brassica rapa HOM05D006337 ORTHO05D008050 8.6e-180 634.4 542 63.8
BcaNung06218 Brassica carinata HOM05D006337 ORTHO05D008050 3.3e-179 632.5 541 63.6
Medtr1g084140 Medicago truncatula HOM05D006337 ORTHO05D008050 1.6e-178 630.2 585 60.0
Rhsim11G0096400 Rhododendron simsii HOM05D006337 ORTHO05D008050 8.1e-178 627.9 561 63.5
SGA_v2.0_scaffold5G02894 Striga asiatica HOM05D006337 ORTHO05D008050 2.4e-177 626.3 552 60.7
unitig_8.g4946 Utricularia gibba HOM05D006337 ORTHO05D008050 3.4e-176 622.5 590 58.1
HPP92_010606 Vanilla planifolia HOM05D006337 ORTHO05D008050 4.4e-176 622.1 564 60.3
Actinidia35517 Actinidia chinensis HOM05D006337 ORTHO05D008050 3.0e-172 609.4 538 62.1
Os12g0562100 Oryza sativa ssp. japonica HOM05D006337 ORTHO05D008050 7.6e-168 594.7 556 57.4
Hund07310 Selenicereus undatus HOM05D006337 ORTHO05D008050 2.4e-153 546.6 555 56.4
AagrBONN_evm.TU.Sc2ySwM_368.2655 Anthoceros agrestis HOM05D006337 ORTHO05D008050 9.6e-147 524.6 467 60.4
CiPaw.07G030200 Carya illinoinensis HOM05D006337 ORTHO05D008050 1.1e-145 521.2 390 71.0
CDE02G2949 Ceratophyllum demersum HOM05D006337 ORTHO05D008050 1.9e-142 510.4 424 66.0
Pp3c25_630 Physcomitrium patens HOM05D006337 ORTHO05D008050 9.3e-142 508.1 476 58.4
Pp3c5_21200 Physcomitrium patens HOM05D006337 ORTHO05D008050 2.5e-139 500.0 538 53.3
SMO118G0422 Selaginella moellendorffii HOM05D006337 ORTHO05D008050 5.3e-137 492.3 462 55.8
Mapoly0001s0146 Marchantia polymorpha HOM05D006337 ORTHO05D008050 9.7e-131 471.5 601 47.1
Pp3c25_1200 Physcomitrium patens HOM05D006337 ORTHO05D008050 4.1e-121 439.5 447 55.3
Dinv24464 Davidia involucrata HOM05D006337 ORTHO05D008050 3.2e-118 429.9 401 62.1
Zm00001eb028490 Zea mays HOM05D006337 ORTHO05D008050 3.4e-107 393.3 319 65.2
CDE09G1129 Ceratophyllum demersum HOM05D006337 ORTHO05D008050 1.4e-97 361.3 331 60.4
Aa31LG11G9810 Aethionema arabicum HOM05D006337 ORTHO05D008050 6.6e-87 325.9 358 53.9
CBR_g24322 Chara braunii HOM05D006337 ORTHO05D008050 2.8e-53 214.2 266 46.6
TWI12G0276 Tripterygium wilfordii HOM05D006337 ORTHO05D008050 1.7e-50 204.9 176 64.2
CDE09G1014 Ceratophyllum demersum HOM05D000041 ORTHO05D000061 1.1e-49 202.2 136 80.9
Zm00001eb354930 Zea mays HOM05D006337 ORTHO05D008050 2.1e-45 188.0 248 44.4
vmacro01570 Vaccinium macrocarpon HOM05D006337 ORTHO05D008050 2.2e-34 151.4 238 41.6
Os05g0131500 Oryza sativa ssp. japonica HOM05D006337 ORTHO05D008050 4.8e-29 133.7 149 52.3
Pp3c20_5190 Physcomitrium patens HOM05D004253 ORTHO05D005013 1.0e-23 115.9 481 24.5
Lalb_Chr02g0147771 Lupinus albus HOM05D006337 ORTHO05D008050 2.3e-23 114.8 80 72.5
Mapoly0049s0027 Marchantia polymorpha HOM05D004253 ORTHO05D005013 3.9e-23 114.0 494 25.3
SMO115G0243 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 5.1e-23 113.6 456 27.9
Os06g0560000 Oryza sativa ssp. japonica HOM05D004253 ORTHO05D005013 1.6e-21 108.6 443 28.0
Glyma.20G096402 Glycine max HOM05D006337 ORTHO05D008050 2.8e-21 107.8 120 53.3
Zm00001eb384340 Zea mays HOM05D004253 ORTHO05D005013 3.1e-20 104.4 490 25.1
AagrBONN_evm.TU.Sc2ySwM_344.1348 Anthoceros agrestis HOM05D004253 ORTHO05D005013 2.0e-19 101.7 457 25.8
HanXRQChr15g0463391 Helianthus annuus HOM05D004253 ORTHO05D005013 1.0e-18 99.4 483 24.8
TAR633G0963 Trochodendron aralioides HOM05D004253 ORTHO05D005013 1.0e-18 99.4 463 25.1
Oeu026968.1 Olea europaea HOM05D004253 ORTHO05D005013 1.3e-18 99.0 481 26.0
SMO118G0042 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 2.2e-18 98.2 457 28.9
vmacro01569 Vaccinium macrocarpon HOM05D006337 ORTHO05D008050 2.2e-18 98.2 88 62.5
PGSC0003DMG400011865 Solanum tuberosum HOM05D004253 ORTHO05D005013 6.5e-18 96.7 459 27.0
CSS0016892 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 1.9e-17 95.1 462 27.5
Sopen10g027900 Solanum pennellii HOM05D004253 ORTHO05D005013 1.9e-17 95.1 462 25.5
Solyc10g076280.3 Solanum lycopersicum HOM05D004253 ORTHO05D005013 4.2e-17 94.0 462 25.8
GSVIVG01030250001 Vitis vinifera HOM05D004253 ORTHO05D005013 9.4e-17 92.8 469 27.1
Nitab4.5_0012987g0010 Nicotiana tabacum HOM05D004253 ORTHO05D005013 2.7e-16 91.3 478 26.4
CAN.G955.1 Capsicum annuum HOM05D004253 ORTHO05D005013 4.6e-16 90.5 472 24.8
PSO349G0271 Papaver somniferum HOM05D004253 ORTHO05D005013 6.1e-16 90.1 445 24.9
GSVIVG01030252001 Vitis vinifera HOM05D004253 ORTHO05D005013 1.4e-15 89.0 462 25.3
PSO017G1341 Papaver somniferum HOM05D004253 ORTHO05D005013 3.0e-15 87.8 458 23.8
VMungo0331G0711 Vigna mungo HOM05D004253 ORTHO05D005013 5.1e-15 87.0 488 24.2
CBR_g24318 Chara braunii HOM05D001161 ORTHO05D000497 6.7e-15 86.7 193 34.2
Nn2g13286 Nelumbo nucifera HOM05D004253 ORTHO05D005013 6.7e-15 86.7 473 25.6
A03p01250 Brassica napus HOM05D004253 ORTHO05D005013 8.8e-15 86.3 482 25.9
C03p01610 Brassica napus HOM05D004253 ORTHO05D005013 1.1e-14 85.9 474 25.5
PSO349G0244 Papaver somniferum HOM05D004253 ORTHO05D005013 1.1e-14 85.9 462 24.9
unitig_8.g4466 Utricularia gibba HOM05D004253 ORTHO05D005013 4.4e-14 84.0 351 26.2
BcaB01g05801 Brassica carinata HOM05D004253 ORTHO05D005013 5.7e-14 83.6 477 24.7
Phvul.010G062200 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 1.3e-13 82.4 464 23.1
BcaB01g05813 Brassica carinata HOM05D004253 ORTHO05D005013 1.7e-13 82.0 453 25.4
Migut.J00086 Erythranthe guttata HOM05D004253 ORTHO05D005013 2.2e-13 81.6 455 24.2
Sed0023395 Sechium edule HOM05D004253 ORTHO05D005013 2.2e-13 81.6 467 22.7
BolC3t12713H Brassica oleracea HOM05D004253 ORTHO05D005013 2.8e-13 81.3 478 25.1
BraA03t09505Z Brassica rapa HOM05D004253 ORTHO05D005013 3.7e-13 80.9 500 25.0
Nn5g27904 Nelumbo nucifera HOM05D004253 ORTHO05D005013 6.3e-13 80.1 453 24.1
Carub.0004s2043 Capsella rubella HOM05D004253 ORTHO05D005013 8.2e-13 79.7 460 23.5
Hma1.2p1_0501F.1_g167250 Hydrangea macrophylla HOM05D004253 ORTHO05D005013 6.9e-12 76.6 471 23.6
Nitab4.5_0000355g0170 Nicotiana tabacum HOM05D004253 ORTHO05D005013 6.9e-12 76.6 477 26.0
ATR0594G059 Amborella trichopoda HOM05D004253 ORTHO05D005013 1.2e-11 75.9 430 25.3
SGA_v2.0_scaffold85G26671 Striga asiatica HOM05D004253 ORTHO05D005013 2.2e-10 71.6 378 25.7
Cre16.g687000 Chlamydomonas reinhardtii HOM05D004253 ORTHO05D005013 2.5e-09 68.2 196 31.1
Dinv25280 Davidia involucrata HOM05D004253 ORTHO05D005013 1.6e-08 65.5 333 26.1
Cfa024502 Carpinus fangiana HOM05D004253 ORTHO05D005013 4.7e-08 63.9 472 23.5
MSTRG.18966 Avicennia marina HOM05D004253 ORTHO05D005013 1.4e-07 62.4 142 36.6
Peaxi162Scf00264g00861 Petunia axillaris HOM05D004253 ORTHO05D005013 3.0e-07 61.2 485 23.3
CBR_g42062 Chara braunii HOM05D004253 ORTHO05D005013 5.2e-07 60.5 172 30.8


User provided reference genes

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