Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.4e-110 402.9 193 100.0
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 7.2e-59 231.1 156 67.3
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 6.1e-58 228.0 197 59.9
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.4e-57 226.9 160 65.0
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 5.2e-57 224.9 156 65.4
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 6.7e-57 224.6 155 65.2
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 8.8e-57 224.2 190 60.5
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.6e-56 222.6 196 58.2
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 3.3e-56 222.2 191 58.6
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 4.4e-56 221.9 162 64.2
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 9.7e-56 220.7 145 68.3
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.3e-55 220.3 157 66.2
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.2e-55 219.5 126 77.8
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 6.3e-55 218.0 182 59.9
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 8.2e-55 217.6 151 66.9
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 8.2e-55 217.6 156 64.1
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 8.2e-55 217.6 152 65.8
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 8.2e-55 217.6 155 63.9
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.8e-54 216.5 179 60.3
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.1e-54 215.3 176 60.8
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 4.1e-54 215.3 188 57.4
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 5.3e-54 214.9 167 63.5
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 9.1e-54 214.2 162 63.6
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 9.1e-54 214.2 137 69.3
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.6e-53 213.4 152 62.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.6e-53 212.6 156 63.5
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 2.6e-53 212.6 159 64.8
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.5e-53 212.2 126 75.4
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 3.5e-53 212.2 181 61.3
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.5e-53 212.2 152 61.8
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 3.5e-53 212.2 155 61.3
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 4.5e-53 211.8 159 63.5
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.9e-53 211.5 152 61.8
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.9e-53 211.5 122 75.4
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 5.9e-53 211.5 128 74.2
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 7.7e-53 211.1 142 65.5
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 7.7e-53 211.1 154 63.0
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.3e-52 210.3 182 59.9
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-52 209.9 136 66.9
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-52 209.1 136 66.9
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.8e-52 208.8 182 58.2
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 5.0e-52 208.4 128 70.3
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.0e-52 208.4 158 62.0
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 8.5e-52 207.6 174 58.0
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.1e-51 207.2 126 73.0
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.1e-51 207.2 165 61.8
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.1e-51 207.2 138 68.1
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.1e-51 207.2 154 63.0
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.1e-51 207.2 194 53.6
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.9e-51 206.5 157 61.1
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.9e-51 206.5 126 72.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.5e-51 206.1 136 66.2
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 3.2e-51 205.7 169 59.2
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.2e-51 205.7 159 60.4
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 4.2e-51 205.3 197 54.8
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 4.2e-51 205.3 126 71.4
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.5e-51 204.9 131 66.4
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 7.2e-51 204.5 129 69.0
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 7.2e-51 204.5 155 61.3
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 9.4e-51 204.1 128 68.8
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 9.4e-51 204.1 145 63.4
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.6e-50 203.4 137 67.2
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 2.1e-50 203.0 126 70.6
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 4.7e-50 201.8 119 75.6
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 6.1e-50 201.4 165 60.6
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.0e-49 200.7 129 68.2
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.4e-49 200.3 122 72.1
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.4e-49 200.3 116 75.9
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 1.4e-49 200.3 150 65.3
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.4e-49 200.3 177 57.1
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.8e-49 199.9 124 71.0
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.8e-49 199.9 182 57.7
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.8e-49 199.9 122 70.5
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.8e-49 199.9 126 69.8
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.8e-49 199.9 122 70.5
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.0e-49 199.1 126 70.6
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.0e-49 199.1 126 69.8
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 3.0e-49 199.1 122 72.1
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.2e-49 198.4 118 73.7
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.2e-49 198.4 130 66.9
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.5e-48 196.8 126 69.0
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.0e-48 196.4 139 63.3
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.5e-48 194.5 205 48.8
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 7.5e-48 194.5 135 65.2
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 9.7e-48 194.1 155 56.8
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.2e-47 193.0 129 68.2
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.8e-47 192.6 137 63.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 3.7e-47 192.2 114 75.4
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 3.7e-47 192.2 127 64.6
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.7e-47 192.2 137 65.7
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 4.8e-47 191.8 144 66.0
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 6.3e-47 191.4 124 65.3
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 8.3e-47 191.0 142 63.4
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.1e-46 190.7 137 62.0
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.1e-46 190.7 137 62.0
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.1e-46 190.7 165 53.3
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 5.3e-46 188.3 159 54.7
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 5.3e-46 188.3 204 47.1
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 5.3e-46 188.3 107 73.8
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.1e-46 187.6 127 64.6
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 9.1e-46 187.6 137 62.0
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.0e-45 186.4 133 61.7
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 5.9e-45 184.9 167 53.9
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.0e-44 184.1 206 47.6
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.8e-44 182.2 123 62.6
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 3.2e-43 179.1 113 66.4
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.5e-43 178.3 123 65.0
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 9.4e-43 177.6 169 52.1
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 4.7e-42 175.3 175 50.3
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 6.1e-42 174.9 115 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 8.8e-41 171.0 123 58.5
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 9.8e-40 167.5 113 64.6
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 9.8e-40 167.5 120 59.2
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.3e-39 164.9 116 57.8
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.4e-38 163.7 120 59.2
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.4e-38 163.7 151 57.0
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.8e-38 163.3 118 58.5
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 2.4e-38 162.9 120 57.5
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 2.4e-38 162.9 131 60.3
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.1e-38 162.2 120 59.2
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.1e-38 162.2 120 57.5
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 5.4e-38 161.8 118 57.6
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 5.4e-38 161.8 118 57.6
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 7.0e-38 161.4 118 57.6
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 7.0e-38 161.4 117 59.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.2e-37 160.6 151 52.3
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 2.7e-37 159.5 118 56.8
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-37 159.5 118 56.8
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 2.7e-37 159.5 118 56.8
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-36 157.5 118 55.9
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.0e-36 157.5 118 55.9
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-36 157.1 118 55.9
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.3e-36 157.1 127 53.5
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 6.6e-36 154.8 93 68.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 8.6e-36 154.5 115 53.0
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.2e-35 152.1 93 68.8
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 7.2e-35 151.4 166 47.0
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 9.5e-35 151.0 114 56.1
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.1e-34 149.8 84 76.2
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 6.1e-34 148.3 121 55.4
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 3.0e-33 146.0 220 41.4
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 1.2e-29 134.0 122 50.8
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 3.9e-28 129.0 127 52.8
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 6.6e-28 128.3 170 44.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.5e-27 127.1 106 55.7
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 7.3e-27 124.8 155 45.8
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 7.3e-27 124.8 189 42.3
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.0e-25 120.9 64 78.1
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 6.8e-25 118.2 123 43.1
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 8.9e-25 117.9 109 51.4
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.0e-24 116.7 156 42.3
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.6e-24 116.3 115 47.8
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 7.5e-24 114.8 100 60.0
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.3e-23 114.0 98 57.1
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.2e-21 107.5 150 36.7
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.7e-21 106.3 63 74.6
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 3.5e-21 105.9 68 66.2
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 3.0e-20 102.8 64 67.2
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 5.8e-16 88.6 72 56.9
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.9e-11 73.6 87 42.5
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 6.2e-10 68.6 84 45.2
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 3.1e-09 66.2 94 39.4
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 3.1e-09 66.2 45 64.4
Pp3c15_19030 Physcomitrium patens HOM05D060542 ORTHO05D043949 3.1e-09 66.2 136 31.6
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 5.2e-09 65.5 77 42.9
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-08 63.5 76 42.1
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 3.4e-08 62.8 92 39.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.9e-07 58.9 75 44.0
Pp3c24_270 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.1e-06 55.8 56 44.6
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 4.1e-06 55.8 32 78.1


User provided reference genes

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