Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 8.9e-90 333.6 167 100.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.7e-54 215.7 169 63.9
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 3.3e-52 208.8 167 64.1
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 5.6e-52 208.0 168 62.5
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.3e-51 206.8 166 63.3
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.8e-50 203.0 185 60.0
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.8e-50 203.0 166 61.4
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.8e-50 203.0 163 61.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 4.0e-50 201.8 175 60.0
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 5.3e-50 201.4 179 57.0
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 5.3e-50 201.4 184 59.8
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 6.9e-50 201.1 179 57.0
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 6.9e-50 201.1 178 59.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 9.0e-50 200.7 165 60.6
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 9.0e-50 200.7 164 61.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.5e-49 199.9 131 71.8
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 2.6e-49 199.1 175 57.7
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.8e-49 198.0 177 57.1
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 5.8e-49 198.0 178 60.1
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.8e-49 198.0 163 60.7
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 7.6e-49 197.6 175 58.3
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.0e-48 197.2 164 58.5
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.0e-48 197.2 168 59.5
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.0e-48 197.2 168 59.5
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.3e-48 196.8 167 59.9
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.3e-48 196.8 135 68.9
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.7e-48 196.4 168 61.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.7e-48 196.4 168 61.9
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.7e-48 196.4 163 60.1
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.2e-48 196.1 178 57.9
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.2e-48 196.1 165 60.6
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 2.9e-48 195.7 186 55.4
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.9e-48 195.7 178 57.3
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.9e-48 195.7 168 61.9
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 8.4e-48 194.1 170 60.0
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.1e-47 193.7 171 57.9
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.4e-47 193.4 178 57.3
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.9e-47 193.0 165 59.4
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.9e-47 193.0 167 58.7
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.5e-47 192.6 177 55.9
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.2e-47 191.8 176 58.5
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 4.2e-47 191.8 168 58.3
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 4.2e-47 191.8 186 54.3
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 5.5e-47 191.4 167 58.7
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 5.5e-47 191.4 162 61.7
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 7.1e-47 191.0 167 59.9
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 7.1e-47 191.0 187 54.5
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 7.1e-47 191.0 176 58.5
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.2e-46 190.3 170 57.6
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.6e-46 189.9 193 54.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.6e-46 189.9 187 54.5
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 2.7e-46 189.1 185 55.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 2.7e-46 189.1 185 55.7
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 4.6e-46 188.3 188 55.9
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 4.6e-46 188.3 177 56.5
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.6e-46 188.3 135 67.4
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 6.0e-46 188.0 137 66.4
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 7.9e-46 187.6 170 58.2
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 7.9e-46 187.6 174 56.9
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.0e-45 187.2 182 57.1
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.3e-45 186.8 176 55.1
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.3e-45 186.8 173 56.1
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.8e-45 186.4 173 54.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.0e-45 185.7 169 58.6
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.1e-45 184.9 166 57.2
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 5.1e-45 184.9 172 57.0
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 6.7e-45 184.5 182 53.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 8.7e-45 184.1 178 52.2
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.1e-44 183.7 131 67.9
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.5e-44 183.3 168 57.7
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.9e-44 183.0 166 56.6
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.3e-44 182.2 166 56.6
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.3e-44 182.2 166 56.6
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 3.3e-44 182.2 171 55.0
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.7e-44 181.4 173 54.9
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 7.4e-44 181.0 135 64.4
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.4e-44 181.0 171 54.4
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 7.4e-44 181.0 136 65.4
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 7.4e-44 181.0 181 51.4
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.2e-43 179.5 175 55.4
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.2e-43 179.5 175 55.4
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.7e-43 178.7 177 52.5
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 4.8e-43 178.3 177 52.5
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 4.8e-43 178.3 177 52.5
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 6.3e-43 177.9 169 55.0
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 8.2e-43 177.6 180 55.0
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.1e-42 177.2 184 52.2
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.1e-42 177.2 176 52.8
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.4e-42 176.8 176 52.8
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.8e-42 176.4 175 52.6
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.8e-42 176.4 152 60.5
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.8e-42 176.4 168 53.6
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 6.9e-42 174.5 175 54.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 9.0e-42 174.1 177 53.1
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 9.0e-42 174.1 134 64.2
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.2e-41 173.7 178 52.8
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.2e-41 173.7 194 51.0
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.5e-41 173.3 171 55.0
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.6e-41 172.6 173 51.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 4.5e-41 171.8 175 51.4
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.9e-41 171.4 120 66.7
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 7.6e-41 171.0 129 63.6
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.7e-40 169.9 130 64.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.2e-40 169.5 172 52.3
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.2e-40 169.5 176 51.1
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.2e-40 169.5 172 52.3
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.8e-40 168.7 173 53.8
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 5.0e-40 168.3 175 49.7
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.4e-39 166.8 188 47.9
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 3.2e-39 165.6 171 51.5
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 5.5e-39 164.9 187 47.6
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 2.7e-38 162.5 150 58.7
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 2.5e-36 156.0 102 71.6
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 9.7e-36 154.1 166 51.8
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 4.1e-34 148.7 148 54.7
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 7.7e-33 144.4 188 44.7
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.0e-32 144.1 188 42.6
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.8e-32 142.1 91 72.5
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.6e-30 136.7 137 53.3
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 7.9e-30 134.4 113 57.5
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.0e-29 134.0 103 60.2
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 1.8e-29 133.3 130 53.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.3e-29 132.9 141 51.8
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 8.8e-29 131.0 146 50.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.5e-28 130.2 123 55.3
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 7.4e-28 127.9 123 53.7
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.3e-27 127.1 102 60.8
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 2.8e-27 125.9 102 59.8
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 8.2e-27 124.4 96 63.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 4.1e-26 122.1 102 54.9
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 9.1e-26 120.9 100 63.0
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 9.1e-26 120.9 105 56.2
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 2.0e-25 119.8 101 61.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 5.9e-25 118.2 71 80.3
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.4e-21 107.1 101 53.5
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.9e-21 105.5 82 61.0
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 8.8e-21 104.4 105 50.5
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.5e-20 103.6 91 58.2
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 4.4e-20 102.1 106 50.0
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.7e-19 100.1 164 38.4
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 3.7e-19 99.0 82 56.1
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.1e-18 95.9 88 59.1
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 5.3e-18 95.1 127 41.7
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 9.1e-18 94.4 98 48.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 2.0e-17 93.2 75 56.0
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.6e-17 92.8 102 47.1
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.5e-16 88.2 64 65.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.2e-15 85.9 67 61.2
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.2e-15 85.9 99 48.5
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.7e-14 82.8 85 49.4
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 6.1e-14 81.6 121 46.3
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 8.8e-13 77.8 87 39.1


User provided reference genes

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