Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G342 Amborella trichopoda HOM05D001155 ORTHO05D065687 7.9e-123 443.7 216 100.0
ATR1136G129 Amborella trichopoda HOM05D000001 ORTHO05D000003 6.9e-26 121.7 137 47.4
ATR0752G194 Amborella trichopoda HOM05D001155 ORTHO05D068260 1.4e-23 114.0 85 70.6
Sed0008806 Sechium edule HOM05D000001 ORTHO05D010175 5.9e-09 65.5 132 28.0
TPR.G2208 Trifolium pratense HOM05D000001 ORTHO05D000003 5.0e-08 62.4 102 32.4
AagrBONN_evm.TU.Sc2ySwM_228.879 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-08 62.0 133 27.1
VMungo0251G2774 Vigna mungo HOM05D000001 ORTHO05D000003 8.5e-08 61.6 114 32.5
Ca_08299_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.1e-07 61.2 102 30.4
AagrBONN_evm.TU.Sc2ySwM_369.322 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-07 60.8 95 31.6
SEGI_16648 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 1.4e-07 60.8 137 27.0
TAR629G2931 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.9e-07 60.5 135 28.9
FAN26G1766 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.5e-07 60.1 102 32.4
Medtr8g098250 Medicago truncatula HOM05D000001 ORTHO05D000003 2.5e-07 60.1 102 32.4
Psat7g051560 Pisum sativum HOM05D000001 ORTHO05D000003 2.5e-07 60.1 102 30.4
MBI06_g06705_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 3.2e-07 59.7 145 29.0
Nn1g05184 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.2e-07 59.7 120 31.7
SalBow6G4353 Salvia bowleyana HOM05D000001 ORTHO05D009340 3.2e-07 59.7 137 28.5
Migut.G00807 Erythranthe guttata HOM05D000001 ORTHO05D009704 4.2e-07 59.3 112 31.2
RcHm_v2.0_Chr2g0116541 Rosa chinensis HOM05D000001 ORTHO05D000003 4.2e-07 59.3 102 31.4
PGSC0003DMG400003087 Solanum tuberosum HOM05D000001 ORTHO05D000003 4.2e-07 59.3 114 29.8
Glyma.05G183900 Glycine max HOM05D000001 ORTHO05D000003 5.5e-07 58.9 114 29.8
Haze_22013 Corylus avellana HOM05D000001 ORTHO05D000003 7.2e-07 58.5 135 30.4
Migut.G00990 Erythranthe guttata HOM05D000001 ORTHO05D009704 7.2e-07 58.5 112 31.2
Gohir.A06G030325 Gossypium hirsutum HOM05D000001 ORTHO05D010175 7.2e-07 58.5 133 29.3
SalBow4G0197 Salvia bowleyana HOM05D000001 ORTHO05D000003 7.2e-07 58.5 180 25.0
AagrBONN_evm.TU.Sc2ySwM_228.2630 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.3e-07 58.2 133 29.3
ClCG02G013350 Citrullus lanatus HOM05D000001 ORTHO05D000003 9.3e-07 58.2 102 28.4
FvH4_1g22400 Fragaria vesca HOM05D000001 ORTHO05D000003 9.3e-07 58.2 102 32.4
Solyc02g071300.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 9.3e-07 58.2 114 29.8
ATR0314G014 Amborella trichopoda HOM05D001155 ORTHO05D066195 1.2e-06 57.8 103 40.8
Eucgr.A02839 Eucalyptus grandis HOM05D000001 ORTHO05D010013 1.2e-06 57.8 168 23.8
Peaxi162Scf00649g00019 Petunia axillaris HOM05D000001 ORTHO05D000003 1.2e-06 57.8 114 32.5
QL11p018247 Quercus lobata HOM05D000001 ORTHO05D000003 1.2e-06 57.8 102 31.4
Sopen02g020360 Solanum pennellii HOM05D000001 ORTHO05D000003 1.2e-06 57.8 114 28.9
AagrBONN_evm.TU.Sc2ySwM_368.33 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 57.4 126 27.8
CSS0050393 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.6e-06 57.4 151 29.8
CiPaw.04G091500 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.6e-06 57.4 102 31.4
Ciclev10010390m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.6e-06 57.4 137 32.1
FAN19G1418 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-06 57.4 102 32.4
Glyma.15G273200 Glycine max HOM05D000001 ORTHO05D000003 1.6e-06 57.4 136 25.0
Lsat_1_v5_gn_3_36021 Lactuca sativa HOM05D000001 ORTHO05D000003 1.6e-06 57.4 137 26.3
PGR119G2213 Punica granatum HOM05D000001 ORTHO05D000003 1.6e-06 57.4 145 25.5
CANSAT11G1676 Cannabis sativa HOM05D000001 ORTHO05D000003 2.1e-06 57.0 134 28.4
Cc09_g09760 Coffea canephora HOM05D000001 ORTHO05D000003 2.1e-06 57.0 141 26.2
FAN28G0652 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.1e-06 57.0 102 31.4
HanXRQChr08g0219761 Helianthus annuus HOM05D000001 ORTHO05D000003 2.1e-06 57.0 137 27.0
Lj4g0016028 Lotus japonicus HOM05D000001 ORTHO05D000003 2.1e-06 57.0 102 30.4
MBI19_g09926_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.1e-06 57.0 137 25.5
unitig_8.g4882 Utricularia gibba HOM05D000001 ORTHO05D000003 2.1e-06 57.0 91 31.9
Actinidia18390 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.7e-06 56.6 140 25.0
AagrBONN_evm.TU.Sc2ySwM_344.5491 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-06 56.6 120 27.5
CAN.G257.53 Capsicum annuum HOM05D000001 ORTHO05D000003 2.7e-06 56.6 114 28.9
Gohir.A11G251500 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.7e-06 56.6 94 31.9
Gorai.009G455300 Gossypium raimondii HOM05D000001 ORTHO05D000003 2.7e-06 56.6 102 30.4
Lj5g0026882 Lotus japonicus HOM05D000001 ORTHO05D000003 2.7e-06 56.6 140 27.9
Lalb_Chr07g0184791 Lupinus albus HOM05D000001 ORTHO05D000003 2.7e-06 56.6 100 32.0
Nn1g08976 Nelumbo nucifera HOM05D000001 ORTHO05D009584 2.7e-06 56.6 147 28.6
PSO210G7149 Papaver somniferum HOM05D000001 ORTHO05D000003 2.7e-06 56.6 125 28.8
PSO675G3036 Papaver somniferum HOM05D000001 ORTHO05D010775 2.7e-06 56.6 140 27.9
Sabra06G0001300 Salix brachista HOM05D000001 ORTHO05D000003 2.7e-06 56.6 140 24.3
TWI15G0229 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 2.7e-06 56.6 94 31.9
Cfa013445 Carpinus fangiana HOM05D000001 ORTHO05D000003 3.6e-06 56.2 135 29.6
Hma1.2p1_1063F.1_g253530 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 3.6e-06 56.2 156 24.4
Hma1.2p1_1063F.1_g253540 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 3.6e-06 56.2 156 24.4
Sc05g0006610 Simmondsia chinensis HOM05D000001 ORTHO05D000003 3.6e-06 56.2 116 29.3
TAR374G0394 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.6e-06 56.2 136 29.4
Atru.chr4.1722 Acer truncatum HOM05D000001 ORTHO05D011287 4.6e-06 55.8 128 29.7
arahy.Tifrunner.gnm1.ann1.44J8X1 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.6e-06 55.8 115 27.8
C08p17480 Brassica napus HOM05D000001 ORTHO05D000003 4.6e-06 55.8 97 29.9
BolC8t49373H Brassica oleracea HOM05D000001 ORTHO05D000003 4.6e-06 55.8 97 29.9
Cpa.g.sc27.13 Carica papaya HOM05D000001 ORTHO05D000003 4.6e-06 55.8 126 26.2
FvH4_1g22550 Fragaria vesca HOM05D000001 ORTHO05D000003 4.6e-06 55.8 102 31.4
Gorai.010G032300 Gossypium raimondii HOM05D000001 ORTHO05D010175 4.6e-06 55.8 133 28.6
MD15G1390700 Malus domestica HOM05D000001 ORTHO05D010175 4.6e-06 55.8 135 26.7
Manes.16G030800 Manihot esculenta HOM05D000001 ORTHO05D000003 4.6e-06 55.8 136 24.3
Nitab4.5_0003714g0110 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.6e-06 55.8 114 28.9
Pp3c3_24770 Physcomitrium patens HOM05D000001 ORTHO05D000003 4.6e-06 55.8 108 31.5
HPP92_021514 Vanilla planifolia HOM05D000001 ORTHO05D000003 4.6e-06 55.8 108 32.4
AagrBONN_evm.TU.Sc2ySwM_117.3391 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.1e-06 55.5 98 30.6
AagrBONN_evm.TU.Sc2ySwM_344.2277 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.1e-06 55.5 140 25.7
Aqoxy4G02149 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 6.1e-06 55.5 100 31.0
COL.COLO4_11009 Corchorus olitorius HOM05D000001 ORTHO05D000003 6.1e-06 55.5 102 31.4
FvH4_3g24230 Fragaria vesca HOM05D000001 ORTHO05D000003 6.1e-06 55.5 123 27.6
FAN11G2304 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.1e-06 55.5 123 27.6
PSO210G2235 Papaver somniferum HOM05D000001 ORTHO05D000003 6.1e-06 55.5 133 27.1
QL02p076114 Quercus lobata HOM05D000001 ORTHO05D000003 6.1e-06 55.5 124 29.0
QL09p011603 Quercus lobata HOM05D000001 ORTHO05D000003 6.1e-06 55.5 133 27.8
TAR625G1373 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.1e-06 55.5 135 28.1
HPP92_021504 Vanilla planifolia HOM05D000001 ORTHO05D000003 6.1e-06 55.5 108 32.4
MSTRG.9202 Avicennia marina HOM05D000001 ORTHO05D000003 7.9e-06 55.1 140 25.7
BcaB03g13039 Brassica carinata HOM05D000001 ORTHO05D000003 7.9e-06 55.1 97 28.9
Cpa.g.sc207.11 Carica papaya HOM05D000001 ORTHO05D000003 7.9e-06 55.1 123 26.8
Cpa.g.sc34.202 Carica papaya HOM05D000001 ORTHO05D011287 7.9e-06 55.1 128 28.9
CiPaw.05G103500 Carya illinoinensis HOM05D000001 ORTHO05D000003 7.9e-06 55.1 140 25.0
DCAR_020475 Daucus carota HOM05D000001 ORTHO05D009340 7.9e-06 55.1 110 29.1
Dinv00698 Davidia involucrata HOM05D000001 ORTHO05D000003 7.9e-06 55.1 102 30.4
MBI07_g21781_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 7.9e-06 55.1 138 25.4
QL03p029538 Quercus lobata HOM05D000001 ORTHO05D000003 7.9e-06 55.1 110 29.1
QL08p034017 Quercus lobata HOM05D000001 ORTHO05D000003 7.9e-06 55.1 121 31.4
GSVIVG01021576001 Vitis vinifera HOM05D000001 ORTHO05D002182 7.9e-06 55.1 127 29.9


User provided reference genes

Program Settings