Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.8e-20 101.7 52 100.0
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 5.2e-12 73.6 41 87.8
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 2.4e-09 64.7 39 76.9
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 3.1e-09 64.3 40 72.5
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 3.1e-09 64.3 40 72.5
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 7.0e-09 63.2 40 72.5
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 9.1e-09 62.8 40 70.0
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 3.5e-08 60.8 40 67.5
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 3.5e-08 60.8 40 67.5
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 3.5e-08 60.8 40 72.5
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 4.5e-08 60.5 40 72.5
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 4.5e-08 60.5 41 68.3
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 4.5e-08 60.5 40 70.0
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 5.9e-08 60.1 35 80.0
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 5.9e-08 60.1 40 70.0
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 5.9e-08 60.1 37 70.3
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 7.7e-08 59.7 40 67.5
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 1.7e-07 58.5 40 70.0
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 1.7e-07 58.5 40 67.5
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 1.7e-07 58.5 40 67.5
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 2.2e-07 58.2 40 70.0
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 2.9e-07 57.8 40 67.5
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 2.9e-07 57.8 42 71.4
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 2.9e-07 57.8 37 73.0
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 3.8e-07 57.4 40 67.5
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 3.8e-07 57.4 41 65.9
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 5.0e-07 57.0 40 67.5
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.0e-07 57.0 34 79.4
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 6.5e-07 56.6 40 67.5
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 8.5e-07 56.2 40 62.5
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 8.5e-07 56.2 40 65.0
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 8.5e-07 56.2 42 64.3
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 1.1e-06 55.8 40 65.0
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 1.1e-06 55.8 42 69.0
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 1.1e-06 55.8 40 65.0
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 1.1e-06 55.8 40 65.0
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.5e-06 55.5 35 68.6
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 1.5e-06 55.5 42 66.7
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 1.5e-06 55.5 40 65.0
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 1.5e-06 55.5 34 76.5
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 1.9e-06 55.1 40 62.5
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 1.9e-06 55.1 40 62.5
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 1.9e-06 55.1 40 62.5
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 1.9e-06 55.1 40 62.5
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-06 55.1 40 62.5
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 2.5e-06 54.7 40 62.5
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 2.5e-06 54.7 37 67.6
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 2.5e-06 54.7 37 67.6
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 4.2e-06 53.9 40 65.0
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 4.2e-06 53.9 40 65.0
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 4.2e-06 53.9 40 65.0
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 4.2e-06 53.9 40 65.0
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 4.2e-06 53.9 40 65.0
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 5.5e-06 53.5 42 66.7
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 5.5e-06 53.5 40 65.0
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 5.5e-06 53.5 40 60.0
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 5.5e-06 53.5 40 60.0
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 5.5e-06 53.5 34 70.6
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 5.5e-06 53.5 38 63.2
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 5.5e-06 53.5 40 60.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 7.2e-06 53.1 40 62.5
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 7.2e-06 53.1 40 62.5
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 7.2e-06 53.1 40 65.0
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 7.2e-06 53.1 37 67.6
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 7.2e-06 53.1 37 67.6
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 9.5e-06 52.8 42 61.9
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 9.5e-06 52.8 40 60.0


User provided reference genes

Program Settings