Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.5e-98 362.8 187 100.0
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 8.5e-81 303.9 186 82.8
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 7.2e-80 300.8 184 82.1
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.2e-79 300.1 191 80.6
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.2e-79 300.1 191 80.6
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.1e-79 299.3 185 82.7
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.8e-78 296.2 184 82.6
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.8e-78 296.2 182 83.0
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.8e-78 296.2 191 80.1
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 3.0e-78 295.4 184 83.7
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 6.7e-78 294.3 178 83.1
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 8.8e-78 293.9 183 82.5
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 8.8e-78 293.9 187 80.7
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.1e-77 293.5 186 81.7
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.1e-77 293.5 181 82.3
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.5e-77 293.1 181 81.8
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.5e-77 293.1 181 81.8
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 2.0e-77 292.7 182 81.3
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.0e-77 292.7 180 82.8
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.5e-77 292.4 185 82.2
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 2.5e-77 292.4 178 82.6
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.3e-77 292.0 175 82.3
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 4.3e-77 291.6 181 81.8
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 5.7e-77 291.2 177 83.6
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 7.4e-77 290.8 185 80.0
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 7.4e-77 290.8 182 80.8
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 9.7e-77 290.4 184 80.4
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.3e-76 290.0 185 82.2
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.3e-76 290.0 177 81.9
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.3e-76 290.0 180 81.7
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.7e-76 289.7 171 83.0
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 2.2e-76 289.3 173 82.1
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 2.2e-76 289.3 171 82.5
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 2.8e-76 288.9 185 80.0
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 3.7e-76 288.5 171 82.5
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 3.7e-76 288.5 181 80.1
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 3.7e-76 288.5 176 84.1
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.8e-76 288.1 182 80.2
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 6.3e-76 287.7 187 79.7
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 8.2e-76 287.3 196 76.5
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.1e-75 287.0 186 79.0
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.4e-75 286.6 183 79.8
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.8e-75 286.2 183 80.9
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.4e-75 285.8 186 76.9
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 2.4e-75 285.8 183 80.3
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.1e-75 285.4 181 80.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 4.1e-75 285.0 186 79.0
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 4.1e-75 285.0 183 79.8
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.1e-75 285.0 171 81.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.1e-75 285.0 171 81.3
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.3e-75 284.6 181 80.1
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 5.3e-75 284.6 186 79.0
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.3e-75 284.6 185 79.5
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 5.3e-75 284.6 176 82.4
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 6.9e-75 284.3 176 83.0
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 9.1e-75 283.9 189 75.1
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 9.1e-75 283.9 185 78.9
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 9.1e-75 283.9 182 80.8
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.2e-74 283.5 171 80.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.2e-74 283.5 171 80.7
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.2e-74 283.5 171 80.1
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.2e-74 283.5 171 80.1
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.5e-74 283.1 187 77.5
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.0e-74 282.7 176 79.5
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 2.0e-74 282.7 176 81.8
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.6e-74 282.3 171 83.0
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 2.6e-74 282.3 182 80.2
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 2.6e-74 282.3 184 79.9
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 3.4e-74 282.0 185 77.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 5.9e-74 281.2 175 81.7
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 7.7e-74 280.8 173 82.1
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.3e-73 280.0 182 77.5
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.3e-73 280.0 186 76.3
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.3e-73 280.0 184 78.8
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.3e-73 280.0 185 77.8
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 1.7e-73 279.6 182 79.1
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.7e-73 279.6 193 77.2
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.2e-73 279.3 173 79.2
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.2e-73 279.3 173 79.2
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.2e-73 279.3 173 79.2
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.2e-73 279.3 173 79.2
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 2.2e-73 279.3 182 78.6
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.8e-73 278.5 172 82.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.8e-73 278.5 172 81.4
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 3.8e-73 278.5 172 81.4
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.8e-73 278.5 185 80.0
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 5.0e-73 278.1 183 79.2
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 8.5e-73 277.3 180 79.4
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 8.5e-73 277.3 172 81.4
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.1e-72 276.9 175 78.3
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.5e-72 275.8 179 78.8
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.5e-72 275.8 182 77.5
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.2e-72 275.4 218 69.7
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 3.2e-72 275.4 185 76.8
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.2e-72 275.0 182 76.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 4.2e-72 275.0 187 76.5
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 5.5e-72 274.6 179 78.2
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.5e-72 274.6 181 77.9
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.6e-71 273.1 201 70.6
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.1e-71 272.7 187 77.0
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.7e-71 272.3 187 75.9
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 7.9e-71 270.8 189 74.1
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.8e-70 269.6 184 76.6
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.8e-70 269.6 227 66.5
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 6.7e-70 267.7 228 64.9
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.1e-69 266.9 183 76.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 4.4e-69 265.0 179 77.1
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 4.5e-66 255.0 231 58.9
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.3e-65 253.4 228 61.8
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 6.5e-65 251.1 180 72.8
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 8.5e-65 250.8 185 72.4
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.1e-64 250.4 154 82.5
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.9e-64 249.6 168 73.8
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 6.1e-63 244.6 176 72.2
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 8.0e-63 244.2 158 78.5
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 3.0e-62 242.3 182 71.4
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 3.3e-61 238.8 163 75.5
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.2e-58 230.3 175 64.6
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 5.9e-58 228.0 137 83.2
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 7.7e-58 227.6 137 83.2
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.2e-57 226.1 131 87.0
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.5e-57 224.6 181 66.9
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 4.2e-56 221.9 131 85.5
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 5.5e-56 221.5 174 63.2
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.2e-55 220.3 132 84.8
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.8e-49 198.7 125 80.8
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.5e-48 196.8 129 78.3
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.7e-47 192.6 125 76.0
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.4e-46 190.3 122 81.1
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 2.3e-46 189.5 138 71.0
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 8.8e-46 187.6 205 55.6
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 2.0e-45 186.4 110 86.4
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 2.6e-45 186.0 132 68.9
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-38 162.9 109 76.1
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-37 160.2 102 76.5
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 2.0e-37 159.8 99 79.8
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.7e-37 158.3 115 70.4
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-35 153.7 99 76.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.2e-34 150.6 172 47.7
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.3e-33 146.4 98 78.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.4e-30 137.1 102 68.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 8.9e-30 134.4 168 42.9
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-29 133.3 82 80.5
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.6e-29 132.9 177 39.0
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 9.8e-29 131.0 92 76.1
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.9e-28 129.4 166 41.6
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 3.2e-27 125.9 93 71.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.1e-27 125.6 104 66.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-25 119.4 94 67.0
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 3.0e-25 119.4 101 64.4
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.5e-24 117.1 85 67.1
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 9.5e-24 114.4 75 76.0
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.2e-19 99.4 64 76.6
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-14 84.3 53 77.4
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.0e-13 80.1 71 59.2
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.5e-10 69.3 114 41.2
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.0e-10 68.6 114 41.2
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.0e-10 68.6 114 41.2
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.3e-09 66.6 114 40.4
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.0e-09 66.2 114 40.4
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 8.6e-09 64.7 114 43.9
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 4.3e-08 62.4 63 54.0
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.8e-06 57.0 36 72.2


User provided reference genes

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