Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G262 Amborella trichopoda HOM05D001548 ORTHO05D003922 4.2e-33 144.1 70 100.0
ATR0693G362 Amborella trichopoda HOM05D001548 ORTHO05D003922 1.4e-20 102.4 59 88.1
MD12G1074500 Malus domestica HOM05D001548 ORTHO05D003922 6.9e-20 100.1 59 78.0
CAN.G1181.11 Capsicum annuum HOM05D001548 ORTHO05D003922 9.1e-20 99.8 59 79.7
Solyc02g078940.3 Solanum lycopersicum HOM05D001548 ORTHO05D003922 9.1e-20 99.8 59 79.7
TWI63G0457 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 9.1e-20 99.8 59 81.4
Cpa.g.sc27.108 Carica papaya HOM05D001548 ORTHO05D003922 1.2e-19 99.4 59 78.0
Nitab4.5_0001170g0200 Nicotiana tabacum HOM05D001548 ORTHO05D003922 1.2e-19 99.4 59 79.7
Sopen02g023750 Solanum pennellii HOM05D001548 ORTHO05D003922 1.2e-19 99.4 59 79.7
PGSC0003DMG400022418 Solanum tuberosum HOM05D001548 ORTHO05D003922 1.2e-19 99.4 59 79.7
Ciclev10015925m.g Citrus clementina HOM05D001548 ORTHO05D003922 2.0e-19 98.6 59 78.0
Hma1.2p1_0144F.1_g064920 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 2.0e-19 98.6 59 81.4
Hma1.2p1_0144F.1_g064936 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 2.0e-19 98.6 59 81.4
Lsat_1_v5_gn_4_57401 Lactuca sativa HOM05D001548 ORTHO05D003922 2.0e-19 98.6 59 81.4
Sc17g0006490 Simmondsia chinensis HOM05D001548 ORTHO05D003922 2.0e-19 98.6 58 82.8
Nitab4.5_0003676g0090 Nicotiana tabacum HOM05D001548 ORTHO05D003922 2.6e-19 98.2 59 78.0
CANSAT56G2247 Cannabis sativa HOM05D001548 ORTHO05D003922 3.4e-19 97.8 59 78.0
Hund23633 Selenicereus undatus HOM05D001548 ORTHO05D003922 3.4e-19 97.8 59 78.0
Duzib160G0467 Durio zibethinus HOM05D001548 ORTHO05D003922 4.5e-19 97.4 59 79.7
Atru.chr10.1984 Acer truncatum HOM05D001548 ORTHO05D003922 5.9e-19 97.1 59 74.6
arahy.Tifrunner.gnm1.ann1.K5KWWW Arachis hypogaea HOM05D001548 ORTHO05D003922 5.9e-19 97.1 59 78.0
EL10Ac8g20626 Beta vulgaris HOM05D001548 ORTHO05D003922 5.9e-19 97.1 59 78.0
Hma1.2p1_0144F.1_g064910 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 7.7e-19 96.7 59 79.7
PGR004G2268 Punica granatum HOM05D001548 ORTHO05D003922 7.7e-19 96.7 59 76.3
Cfa000368 Carpinus fangiana HOM05D001548 ORTHO05D003922 1.0e-18 96.3 59 78.0
AUR62016918 Chenopodium quinoa HOM05D001548 ORTHO05D003922 1.0e-18 96.3 59 76.3
Haze_06555 Corylus avellana HOM05D001548 ORTHO05D003922 1.0e-18 96.3 59 78.0
Duzib235G0785 Durio zibethinus HOM05D001548 ORTHO05D003922 1.0e-18 96.3 59 78.0
Prupe.7G059300 Prunus persica HOM05D001548 ORTHO05D003922 1.0e-18 96.3 59 78.0
SEGI_27377 Sequoiadendron giganteum HOM05D001548 ORTHO05D003922 1.0e-18 96.3 59 79.7
arahy.Tifrunner.gnm1.ann1.B92LJH Arachis hypogaea HOM05D001548 ORTHO05D003922 1.3e-18 95.9 59 78.0
CSS0049882 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003922 1.3e-18 95.9 59 79.7
MELO3C007314.2 Cucumis melo HOM05D001548 ORTHO05D003922 1.3e-18 95.9 59 76.3
CsaV3_1G014810 Cucumis sativus L. HOM05D001548 ORTHO05D003922 1.3e-18 95.9 59 78.0
Ah.09g235980 Amaranthus hybridus HOM05D003383 ORTHO05D003890 1.7e-18 95.5 59 76.3
COL.COLO4_31558 Corchorus olitorius HOM05D001548 ORTHO05D003922 1.7e-18 95.5 59 78.0
Haze_06554 Corylus avellana HOM05D001548 ORTHO05D003922 1.7e-18 95.5 59 76.3
ECA234G0352 Erigeron canadensis HOM05D001548 ORTHO05D003922 1.7e-18 95.5 59 76.3
Eucgr.D00699 Eucalyptus grandis HOM05D001548 ORTHO05D003922 1.7e-18 95.5 59 78.0
Prupe.7G059000 Prunus persica HOM05D001548 ORTHO05D003922 1.7e-18 95.5 59 78.0
Sabra04G0022000 Salix brachista HOM05D001548 ORTHO05D003922 1.7e-18 95.5 59 78.0
Peaxi162Scf00527g00322 Petunia axillaris HOM05D001548 ORTHO05D003922 2.2e-18 95.1 59 76.3
SalBow8G3959 Salvia bowleyana HOM05D001548 ORTHO05D003922 2.2e-18 95.1 59 76.3
vmacro22278 Vaccinium macrocarpon HOM05D001548 ORTHO05D003922 2.2e-18 95.1 59 78.0
Atru.chr10.1985 Acer truncatum HOM05D001548 ORTHO05D003922 2.9e-18 94.7 59 72.9
CDE11G1200 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 2.9e-18 94.7 59 78.0
CsaV3_6G049820 Cucumis sativus L. HOM05D001548 ORTHO05D003922 2.9e-18 94.7 59 74.6
DCAR_008065 Daucus carota HOM05D001548 ORTHO05D003922 2.9e-18 94.7 59 78.0
Dinv39801 Davidia involucrata HOM05D001548 ORTHO05D003922 2.9e-18 94.7 59 78.0
Rhsim13G0174500 Rhododendron simsii HOM05D001548 ORTHO05D003922 2.9e-18 94.7 59 76.3
MSTRG.15920 Avicennia marina HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 76.3
Cfa000369 Carpinus fangiana HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 76.3
CiPaw.09G159300 Carya illinoinensis HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 76.3
AUR62014739 Chenopodium quinoa HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 74.6
COL.COLO4_31559 Corchorus olitorius HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 78.0
Eucgr.A02651 Eucalyptus grandis HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 76.3
Manes.16G022100 Manihot esculenta HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 76.3
Prupe.4G038700 Prunus persica HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 76.3
GSVIVG01005848001 Vitis vinifera HOM05D001548 ORTHO05D003922 3.8e-18 94.4 59 76.3
CAN.G1649.4 Capsicum annuum HOM05D001548 ORTHO05D003922 5.0e-18 94.0 57 77.2
ClCG01G022620 Citrullus lanatus HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 74.6
FvH4_3g04320 Fragaria vesca HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 78.0
FAN11G0633 Fragaria x ananassa HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 78.0
FAN21G4059 Fragaria x ananassa HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 78.0
FAN25G3513 Fragaria x ananassa HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 78.0
Manes.16G022000 Manihot esculenta HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 76.3
Os02g0805600 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 78.0
Potri.004G036100 Populus trichocarpa HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 76.3
Thecc.06G196800 Theobroma cacao HOM05D001548 ORTHO05D003922 5.0e-18 94.0 59 78.0
TAR626G1284 Trochodendron aralioides HOM05D001548 ORTHO05D003922 5.0e-18 94.0 58 77.6
AL7G32440 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 6.5e-18 93.6 58 75.9
Carub.0007s1983 Capsella rubella HOM05D001548 ORTHO05D003922 6.5e-18 93.6 58 75.9
HanXRQChr17g0555731 Helianthus annuus HOM05D001548 ORTHO05D003922 6.5e-18 93.6 59 79.7
RcHm_v2.0_Chr5g0006701 Rosa chinensis HOM05D001548 ORTHO05D003922 6.5e-18 93.6 59 78.0
Sed0019244 Sechium edule HOM05D001548 ORTHO05D003922 6.5e-18 93.6 59 74.6
TAR626G1601 Trochodendron aralioides HOM05D001548 ORTHO05D003922 6.5e-18 93.6 58 75.9
AT4G21580 Arabidopsis thaliana HOM05D001548 ORTHO05D003922 8.5e-18 93.2 58 75.9
MELO3C004714.2 Cucumis melo HOM05D001548 ORTHO05D003922 8.5e-18 93.2 59 76.3
Eucgr.A02652 Eucalyptus grandis HOM05D001548 ORTHO05D003922 8.5e-18 93.2 59 74.6
Lj1A1211G82 Lonicera japonica HOM05D001548 ORTHO05D003922 8.5e-18 93.2 58 81.0
MD05G1323900 Malus domestica HOM05D001548 ORTHO05D003922 8.5e-18 93.2 59 76.3
Psat1g207880 Pisum sativum HOM05D001548 ORTHO05D003922 8.5e-18 93.2 59 78.0
SEGI_40386 Sequoiadendron giganteum HOM05D001548 ORTHO05D003922 8.5e-18 93.2 58 77.6
Thecc.06G196700 Theobroma cacao HOM05D001548 ORTHO05D003922 8.5e-18 93.2 59 74.6
Actinidia01927 Actinidia chinensis HOM05D001548 ORTHO05D003922 1.1e-17 92.8 59 74.6
Actinidia05591 Actinidia chinensis HOM05D001548 ORTHO05D003922 1.1e-17 92.8 59 74.6
Aqoxy1G00822 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.1e-17 92.8 57 77.2
Aqoxy1G02697 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.1e-17 92.8 57 77.2
CARHR228260 Cardamine hirsuta HOM05D001548 ORTHO05D003922 1.1e-17 92.8 58 77.6
Medtr2g012420 Medicago truncatula HOM05D001548 ORTHO05D003922 1.4e-17 92.4 59 74.6
Medtr4g050710 Medicago truncatula HOM05D001548 ORTHO05D003922 1.4e-17 92.4 59 74.6
PSO541G1752 Papaver somniferum HOM05D001548 ORTHO05D003922 1.4e-17 92.4 59 76.3
HPP92_013220 Vanilla planifolia HOM05D001548 ORTHO05D003922 1.4e-17 92.4 59 74.6
HPP92_013258 Vanilla planifolia HOM05D001548 ORTHO05D003922 1.4e-17 92.4 59 74.6
C01p15540 Brassica napus HOM05D001548 ORTHO05D003922 1.9e-17 92.0 58 77.6
BolC1t01506H Brassica oleracea HOM05D001548 ORTHO05D003922 1.9e-17 92.0 58 77.6
BraA01t01234Z Brassica rapa HOM05D001548 ORTHO05D003922 1.9e-17 92.0 58 77.6
PSO675G8570 Papaver somniferum HOM05D001548 ORTHO05D003922 1.9e-17 92.0 59 74.6
Phvul.006G190900 Phaseolus vulgaris HOM05D001548 ORTHO05D003922 1.9e-17 92.0 59 76.3
Aa31LG6G3590 Aethionema arabicum HOM05D001548 ORTHO05D003922 2.5e-17 91.7 59 74.6
Migut.M01197 Erythranthe guttata HOM05D001548 ORTHO05D003922 2.5e-17 91.7 59 76.3
Gohir.D05G167400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 2.5e-17 91.7 59 74.6
Gorai.009G172500 Gossypium raimondii HOM05D001548 ORTHO05D003922 2.5e-17 91.7 59 74.6
QL05p081681 Quercus lobata HOM05D001548 ORTHO05D003922 2.5e-17 91.7 59 72.9
SGA_v2.0_scaffold7G03963 Striga asiatica HOM05D001548 ORTHO05D003922 2.5e-17 91.7 59 74.6
Zm00001eb258260 Zea mays HOM05D001548 ORTHO05D003922 2.5e-17 91.7 59 76.3
Aqoxy339s001 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 3.2e-17 91.3 56 78.6
Medtr2g012380 Medicago truncatula HOM05D001548 ORTHO05D003922 3.2e-17 91.3 59 74.6
Medtr4g050760 Medicago truncatula HOM05D001548 ORTHO05D003922 3.2e-17 91.3 59 74.6
Sp7g19720 Schrenkiella parvula HOM05D001548 ORTHO05D003922 3.2e-17 91.3 59 74.6
Zm00001eb191990 Zea mays HOM05D001548 ORTHO05D003922 3.2e-17 91.3 59 76.3
BcaNung02778 Brassica carinata HOM05D001548 ORTHO05D003922 4.2e-17 90.9 58 75.9
Thhalv10025712m.g Eutrema salsugineum HOM05D001548 ORTHO05D003922 4.2e-17 90.9 58 75.9
Lj6g0026396 Lotus japonicus HOM05D001548 ORTHO05D003922 4.2e-17 90.9 59 76.3
THA.LOC104812957 Tarenaya hassleriana HOM05D001548 ORTHO05D003922 4.2e-17 90.9 58 75.9
VMungo0540G2381 Vigna mungo HOM05D001548 ORTHO05D003922 4.2e-17 90.9 59 74.6
Ca_00270_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 5.5e-17 90.5 59 74.6
Ca_00271_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 5.5e-17 90.5 59 74.6
Nn1g06719 Nelumbo nucifera HOM05D001548 ORTHO05D003922 5.5e-17 90.5 58 79.3
arahy.Tifrunner.gnm1.ann1.F566GJ Arachis hypogaea HOM05D001548 ORTHO05D003922 7.2e-17 90.1 59 71.2
CiPaw.10G119300 Carya illinoinensis HOM05D001548 ORTHO05D003922 7.2e-17 90.1 59 74.6
CiPaw.10G119700 Carya illinoinensis HOM05D001548 ORTHO05D003922 7.2e-17 90.1 59 74.6
Glyma.15G068300 Glycine max HOM05D001548 ORTHO05D003922 7.2e-17 90.1 59 72.9
Gohir.A05G164400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 7.2e-17 90.1 59 72.9
Gohir.D05G167300 Gossypium hirsutum HOM05D001548 ORTHO05D003922 7.2e-17 90.1 59 74.6
Sabra11G0030900 Salix brachista HOM05D001548 ORTHO05D003922 7.2e-17 90.1 59 71.2
Gorai.009G172400 Gossypium raimondii HOM05D001548 ORTHO05D003922 9.4e-17 89.7 59 72.9
Lalb_Chr15g0090061 Lupinus albus HOM05D001548 ORTHO05D003922 9.4e-17 89.7 59 74.6
FvH4_3g04340 Fragaria vesca HOM05D001548 ORTHO05D003922 1.2e-16 89.4 59 74.6
FAN21G2301 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.2e-16 89.4 59 74.6
Gohir.A10G019800 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.2e-16 89.4 59 74.6
Gohir.D10G020600 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.2e-16 89.4 59 74.6
Gorai.011G021700 Gossypium raimondii HOM05D001548 ORTHO05D003922 1.2e-16 89.4 59 74.6
QL05p081676 Quercus lobata HOM05D001548 ORTHO05D003922 1.2e-16 89.4 59 69.5
Rhsim13G0174400 Rhododendron simsii HOM05D001548 ORTHO05D003922 2.1e-16 88.6 59 74.6
GSVIVG01005847001 Vitis vinifera HOM05D001548 ORTHO05D003922 2.1e-16 88.6 58 74.1
Cc02_g12600 Coffea canephora HOM05D001548 ORTHO05D003922 3.6e-16 87.8 60 71.7
RcHm_v2.0_Chr1g0318171 Rosa chinensis HOM05D001548 ORTHO05D003922 3.6e-16 87.8 59 72.9
RcHm_v2.0_Chr5g0006721 Rosa chinensis HOM05D001548 ORTHO05D003922 3.6e-16 87.8 59 72.9
CARHR228270 Cardamine hirsuta HOM05D001548 ORTHO05D003922 8.0e-16 86.7 58 72.4
Lalb_Chr20g0122221 Lupinus albus HOM05D001548 ORTHO05D003922 8.0e-16 86.7 59 72.9
Oeu053926.1 Olea europaea HOM05D001548 ORTHO05D003922 1.0e-15 86.3 58 74.1
Oeu053927.1 Olea europaea HOM05D001548 ORTHO05D003922 1.0e-15 86.3 59 72.9
Zm00001eb339820 Zea mays HOM05D001548 ORTHO05D003922 1.0e-15 86.3 59 72.9
AagrBONN_evm.TU.Sc2ySwM_228.729 Anthoceros agrestis HOM05D001548 ORTHO05D003922 2.3e-15 85.1 59 71.2
A01p12900 Brassica napus HOM05D001548 ORTHO05D003922 2.3e-15 85.1 57 73.7
unitig_748.g7573 Utricularia gibba HOM05D001548 ORTHO05D003922 3.0e-15 84.7 59 71.2
SMO367G0057 Selaginella moellendorffii HOM05D001548 ORTHO05D003922 6.7e-15 83.6 59 67.8
FAN11G1894 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.6e-14 81.6 68 64.7
FAN25G1077 Fragaria x ananassa HOM05D001548 ORTHO05D003922 5.7e-14 80.5 68 63.2
Pp3c12_2540 Physcomitrium patens HOM05D001548 ORTHO05D003922 7.4e-14 80.1 58 69.0
Sed0014396 Sechium edule HOM05D001548 ORTHO05D003922 3.7e-13 77.8 57 68.4
Mapoly0005s0036 Marchantia polymorpha HOM05D001548 ORTHO05D003922 4.8e-13 77.4 59 62.7
FAN16G3333 Fragaria x ananassa HOM05D001548 ORTHO05D003922 8.2e-13 76.6 52 75.0
FvH4_3g02190 Fragaria vesca HOM05D001548 ORTHO05D003922 4.1e-12 74.3 62 59.7
Cc09_g10020 Coffea canephora HOM05D001548 ORTHO05D003922 1.2e-11 72.8 58 56.9
RcHm_v2.0_Chr5g0030211 Rosa chinensis HOM05D001548 ORTHO05D003922 2.0e-11 72.0 62 50.0
RcHm_v2.0_Chr5g0030371 Rosa chinensis HOM05D001548 ORTHO05D003922 2.0e-11 72.0 62 50.0
RcHm_v2.0_Chr5g0030471 Rosa chinensis HOM05D001548 ORTHO05D003922 2.0e-11 72.0 62 50.0
Psat1g207920 Pisum sativum HOM05D001548 ORTHO05D003922 3.5e-11 71.2 59 57.6
CDE05G1551 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 1.5e-09 65.9 42 76.2
FvH4_6g30490 Fragaria vesca HOM05D001548 ORTHO05D003922 2.5e-09 65.1 59 57.6
Cc10_g04960 Coffea canephora HOM05D001548 ORTHO05D003922 3.6e-08 61.2 53 50.9
RcHm_v2.0_Chr5g0003521 Rosa chinensis HOM05D001548 ORTHO05D003922 3.6e-08 61.2 57 56.1
RcHm_v2.0_Chr2g0162661 Rosa chinensis HOM05D001548 ORTHO05D003922 1.4e-07 59.3 36 75.0
RcHm_v2.0_Chr5g0003241 Rosa chinensis HOM05D001548 ORTHO05D003922 1.4e-07 59.3 48 60.4
Cc09_g10030 Coffea canephora HOM05D001548 ORTHO05D003922 6.7e-07 57.0 57 49.1


User provided reference genes

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