Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.7e-61 238.4 117 100.0
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 9.5e-38 160.2 113 74.3
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.0e-36 156.8 103 78.6
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 2.3e-36 155.6 108 75.9
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.3e-36 155.6 114 71.1
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.3e-36 155.6 107 76.6
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.3e-36 155.6 107 76.6
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 6.8e-36 154.1 92 80.4
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 8.9e-36 153.7 103 76.7
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.5e-35 152.9 103 74.8
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.0e-35 152.5 114 69.3
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.6e-35 152.1 103 74.8
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 3.4e-35 151.8 108 75.0
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 5.7e-35 151.0 88 84.1
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 5.7e-35 151.0 95 80.0
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.5e-35 150.6 103 72.8
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.5e-35 150.6 103 72.8
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 7.5e-35 150.6 103 72.8
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 9.8e-35 150.2 112 67.9
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 9.8e-35 150.2 104 72.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 9.8e-35 150.2 114 68.4
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 9.8e-35 150.2 100 78.0
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.3e-34 149.8 86 84.9
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.3e-34 149.8 84 85.7
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.3e-34 149.8 87 83.9
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.7e-34 149.4 87 82.8
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.2e-34 149.1 87 82.8
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 3.7e-34 148.3 84 83.3
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 3.7e-34 148.3 84 83.3
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 3.7e-34 148.3 84 83.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.7e-34 148.3 87 82.8
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 6.3e-34 147.5 103 73.8
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 6.3e-34 147.5 82 85.4
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 8.3e-34 147.1 105 74.3
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 8.3e-34 147.1 84 84.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 8.3e-34 147.1 101 71.3
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.8e-33 146.0 84 81.0
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 3.1e-33 145.2 87 81.6
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 3.1e-33 145.2 112 66.1
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 4.1e-33 144.8 81 86.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 5.4e-33 144.4 103 70.9
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 5.4e-33 144.4 90 78.9
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.4e-33 144.4 92 77.2
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 5.4e-33 144.4 106 67.9
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 7.0e-33 144.1 99 74.7
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 7.0e-33 144.1 97 73.2
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.2e-32 143.3 87 79.3
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.2e-32 143.3 82 85.4
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.2e-32 143.3 81 85.2
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.6e-32 142.9 87 75.9
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.6e-32 142.9 83 83.1
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.6e-32 142.9 85 82.4
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.6e-32 142.9 106 68.9
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.0e-32 142.5 88 80.7
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.7e-32 142.1 81 84.0
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 3.5e-32 141.7 110 71.8
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.5e-32 141.7 88 79.5
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.9e-32 141.0 105 69.5
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 5.9e-32 141.0 84 79.8
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 5.9e-32 141.0 81 82.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 5.9e-32 141.0 99 71.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.3e-31 139.8 87 77.0
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.3e-31 139.8 102 67.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.3e-31 139.8 86 79.1
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.7e-31 139.4 85 78.8
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.3e-31 139.0 85 78.8
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.9e-31 138.7 82 79.3
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.8e-31 138.3 84 78.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 5.0e-31 137.9 102 66.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 5.0e-31 137.9 103 69.9
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 6.6e-31 137.5 106 64.2
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 6.6e-31 137.5 88 76.1
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 8.6e-31 137.1 102 69.6
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 8.6e-31 137.1 108 70.4
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.1e-30 136.7 106 67.0
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.5e-30 136.3 88 77.3
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.5e-30 136.3 88 77.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.9e-30 136.0 85 76.5
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.9e-30 136.0 85 76.5
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.9e-30 136.0 117 64.1
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.5e-30 135.6 137 56.9
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 2.5e-30 135.6 118 62.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.5e-30 135.6 115 64.3
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.5e-30 135.6 88 76.1
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.3e-30 135.2 112 63.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 3.3e-30 135.2 88 73.9
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 3.3e-30 135.2 84 75.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 4.3e-30 134.8 84 76.2
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.6e-30 134.4 84 73.8
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 5.6e-30 134.4 101 65.3
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 5.6e-30 134.4 88 76.1
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 7.3e-30 134.0 99 69.7
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.5e-30 133.7 82 74.4
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.1e-29 132.5 107 63.6
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 2.1e-29 132.5 81 76.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.1e-29 132.5 81 76.5
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.1e-29 132.5 81 76.5
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.1e-29 132.5 102 63.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.1e-29 132.5 107 63.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 2.1e-29 132.5 81 76.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.8e-29 132.1 81 75.3
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 3.6e-29 131.7 85 74.1
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 4.7e-29 131.3 81 75.3
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 6.1e-29 131.0 108 63.0
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 6.1e-29 131.0 156 50.6
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 6.1e-29 131.0 81 75.3
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.0e-28 130.2 86 75.6
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.4e-28 129.8 102 63.7
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-28 129.4 102 62.7
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.8e-28 129.4 99 67.7
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.3e-28 129.0 83 75.9
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 4.0e-28 128.3 103 65.0
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.2e-28 127.9 99 66.7
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 8.9e-28 127.1 83 74.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 8.9e-28 127.1 84 71.4
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 8.9e-28 127.1 79 75.9
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.4e-27 125.2 84 71.4
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 5.8e-27 124.4 106 61.3
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.5e-27 124.0 82 69.5
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.5e-27 124.0 82 69.5
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.1e-25 120.2 106 60.4
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-25 119.8 82 68.3
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.9e-25 119.4 115 56.5
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 9.2e-25 117.1 91 64.8
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.6e-24 116.3 129 52.7
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.0e-24 115.9 95 61.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.7e-23 112.8 111 63.1
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.6e-23 110.5 68 82.4
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.5e-22 109.8 70 74.3
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.5e-22 109.0 90 61.1
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 3.3e-22 108.6 65 83.1
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 5.6e-22 107.8 92 58.7
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 5.6e-22 107.8 89 61.8
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 7.3e-22 107.5 63 82.5
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.2e-20 101.3 68 72.1
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.0e-19 99.4 77 70.1
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.4e-19 98.6 91 62.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.4e-19 98.6 91 62.6
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 9.8e-19 97.1 60 80.0
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.9e-18 95.5 66 69.7
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 8.3e-18 94.0 88 58.0
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.4e-17 92.4 68 64.7
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 4.1e-17 91.7 62 72.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 3.5e-16 88.6 54 81.5
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.6e-16 88.2 51 84.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 6.0e-16 87.8 69 59.4
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.3e-15 86.7 79 51.9
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-15 85.5 72 58.3
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-15 85.5 72 58.3
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 3.0e-15 85.5 69 62.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 4.3e-14 81.6 85 54.1
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.6e-13 78.6 94 52.1
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.1e-13 77.4 54 72.2
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 7.5e-11 70.9 55 60.0
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.7e-10 69.7 68 47.1
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.3e-10 67.4 46 73.9
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.1e-09 65.1 50 72.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 7.1e-09 64.3 73 52.1
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 2.1e-08 62.8 45 64.4
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 3.0e-07 58.9 67 47.8
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 7.3e-06 54.3 55 41.8
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 7.3e-06 54.3 55 41.8


User provided reference genes

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