Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 2.8e-161 572.0 317 100.0
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 8.3e-28 128.6 141 49.6
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 4.1e-27 126.3 135 46.7
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 5.4e-27 125.9 383 27.2
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.4e-27 125.9 128 46.9
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 4.5e-26 122.9 133 48.1
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 5.9e-26 122.5 125 51.2
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 5.9e-26 122.5 128 47.7
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.3e-25 121.3 420 26.9
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.0e-25 119.4 128 49.2
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.5e-24 117.9 122 46.7
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 1.5e-24 117.9 380 28.2
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.9e-24 117.5 136 44.1
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.5e-24 117.1 128 48.4
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.2e-24 116.7 142 43.7
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 3.2e-24 116.7 315 30.5
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 4.2e-24 116.3 131 48.1
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 5.5e-24 115.9 128 48.4
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.5e-24 115.9 128 48.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.5e-24 115.9 128 48.4
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 9.5e-24 115.2 140 42.1
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 9.5e-24 115.2 107 51.4
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 9.5e-24 115.2 137 46.7
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.2e-23 114.8 372 29.6
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.6e-23 114.4 128 47.7
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 2.8e-23 113.6 127 44.1
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 3.6e-23 113.2 329 29.8
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.7e-23 112.8 126 46.0
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 4.7e-23 112.8 127 44.1
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 6.1e-23 112.5 103 50.5
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.4e-22 111.3 126 45.2
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.4e-22 111.3 140 44.3
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 1.4e-22 111.3 154 42.9
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.8e-22 110.9 131 45.0
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 2.3e-22 110.5 369 29.3
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 3.0e-22 110.2 166 37.3
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 3.0e-22 110.2 136 41.9
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 4.0e-22 109.8 128 43.8
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 4.0e-22 109.8 129 41.9
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 5.2e-22 109.4 140 44.3
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 6.8e-22 109.0 374 29.4
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 6.8e-22 109.0 374 29.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 6.8e-22 109.0 134 43.3
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 8.8e-22 108.6 142 43.7
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 1.5e-21 107.8 140 44.3
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.5e-21 107.8 128 43.8
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.5e-21 107.8 326 27.6
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 2.6e-21 107.1 127 46.5
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 3.4e-21 106.7 134 41.8
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.4e-21 106.7 304 31.6
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 4.4e-21 106.3 135 41.5
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.4e-21 106.3 361 28.0
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.4e-21 106.3 361 28.0
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 5.7e-21 105.9 154 40.3
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 5.7e-21 105.9 151 41.7
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 5.7e-21 105.9 129 45.7
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 5.7e-21 105.9 127 45.7
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 7.5e-21 105.5 358 25.4
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 7.5e-21 105.5 125 46.4
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.3e-20 104.8 359 30.1
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.3e-20 104.8 130 41.5
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.7e-20 104.4 130 44.6
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.7e-20 104.4 120 47.5
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.7e-20 104.4 108 45.4
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.7e-20 104.4 124 46.0
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.7e-20 104.4 364 26.9
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 2.2e-20 104.0 312 29.5
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.2e-20 104.0 331 27.5
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 2.8e-20 103.6 130 46.2
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 2.8e-20 103.6 123 44.7
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 3.7e-20 103.2 124 45.2
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 4.9e-20 102.8 106 46.2
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 4.9e-20 102.8 141 41.8
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 6.3e-20 102.4 131 41.2
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 6.3e-20 102.4 129 45.7
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 6.3e-20 102.4 129 45.7
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 6.3e-20 102.4 329 25.8
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 6.3e-20 102.4 396 25.0
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 8.3e-20 102.1 123 45.5
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 8.3e-20 102.1 106 46.2
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.1e-19 101.7 123 44.7
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.1e-19 101.7 135 40.0
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.4e-19 101.3 104 46.2
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 1.4e-19 101.3 134 38.8
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.8e-19 100.9 127 44.9
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.8e-19 100.9 406 24.4
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 2.4e-19 100.5 404 28.0
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.4e-19 100.5 331 31.1
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 3.1e-19 100.1 124 44.4
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 3.1e-19 100.1 101 47.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.1e-19 100.1 134 44.8
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 4.1e-19 99.8 326 25.2
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 5.4e-19 99.4 116 46.6
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 7.0e-19 99.0 121 43.0
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 7.0e-19 99.0 106 48.1
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 9.2e-19 98.6 103 46.6
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 9.2e-19 98.6 333 29.1
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 9.2e-19 98.6 103 47.6
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 9.2e-19 98.6 402 26.1
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 1.2e-18 98.2 399 32.8
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 1.6e-18 97.8 133 40.6
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 2.0e-18 97.4 129 43.4
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.0e-18 97.4 131 43.5
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.7e-18 97.1 359 28.4
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 2.7e-18 97.1 125 42.4
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 2.7e-18 97.1 133 40.6
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 3.5e-18 96.7 132 41.7
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 4.5e-18 96.3 133 42.1
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 4.5e-18 96.3 322 24.5
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 5.9e-18 95.9 128 39.8
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.0e-17 95.1 137 40.1
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.0e-17 95.1 119 42.0
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 1.3e-17 94.7 98 48.0
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 1.3e-17 94.7 130 42.3
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 1.3e-17 94.7 121 41.3
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 1.7e-17 94.4 128 39.8
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.7e-17 94.4 96 46.9
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.3e-17 94.0 127 43.3
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 2.9e-17 93.6 132 40.9
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.9e-17 93.6 402 23.6
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 2.9e-17 93.6 136 36.8
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 3.8e-17 93.2 123 43.1
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.0e-17 92.8 388 29.9
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 6.6e-17 92.4 131 41.2
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 6.6e-17 92.4 118 44.9
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 6.6e-17 92.4 330 31.8
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 6.6e-17 92.4 126 42.9
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 1.9e-16 90.9 358 25.1
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.3e-16 90.1 119 42.9
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 3.6e-15 86.7 130 38.5
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 4.7e-15 86.3 69 55.1
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 6.1e-15 85.9 104 42.3
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 6.1e-15 85.9 131 38.2
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 1.4e-14 84.7 145 35.9
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.7e-12 76.6 122 34.4
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.2e-11 73.6 102 36.3
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 5.4e-11 72.8 115 33.9
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 3.0e-09 67.0 121 35.5
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 3.9e-09 66.6 91 37.4
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 1.9e-08 64.3 101 35.6
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 6.2e-07 59.3 55 52.7
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 2.3e-06 57.4 104 27.9


User provided reference genes

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