Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 9.5e-52 206.5 97 100.0
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 9.0e-18 93.6 86 53.5
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 1.4e-15 86.3 73 60.3
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.1e-14 82.4 104 46.2
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 6.0e-14 80.9 104 46.2
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 7.9e-14 80.5 66 63.6
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 1.3e-13 79.7 92 48.9
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 1.3e-13 79.7 93 46.2
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 5.1e-13 77.8 79 50.6
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.1e-12 76.6 74 52.7
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.1e-12 76.6 72 56.9
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 1.5e-12 76.3 69 56.5
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 1.9e-12 75.9 69 60.9
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 3.3e-12 75.1 89 48.3
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 3.3e-12 75.1 88 45.5
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 7.4e-12 73.9 72 52.8
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 7.4e-12 73.9 90 50.0
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 1.3e-11 73.2 86 51.2
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.3e-11 73.2 66 54.5
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 2.2e-11 72.4 62 64.5
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 2.2e-11 72.4 74 50.0
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 2.2e-11 72.4 75 53.3
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 2.8e-11 72.0 62 64.5
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 3.7e-11 71.6 68 58.8
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 4.8e-11 71.2 64 56.2
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 6.3e-11 70.9 68 58.8
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 6.3e-11 70.9 79 53.2
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 6.3e-11 70.9 55 60.0
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 8.2e-11 70.5 93 45.2
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 8.2e-11 70.5 76 47.4
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.1e-10 70.1 72 52.8
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.1e-10 70.1 65 55.4
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.4e-10 69.7 89 46.1
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 2.4e-10 68.9 62 62.9
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 2.4e-10 68.9 72 52.8
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 2.4e-10 68.9 70 60.0
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 3.1e-10 68.6 84 46.4
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 4.1e-10 68.2 86 45.3
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 6.9e-10 67.4 63 52.4
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 1.5e-09 66.2 56 58.9
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 1.5e-09 66.2 83 44.6
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 1.5e-09 66.2 68 51.5
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 2.0e-09 65.9 89 43.8
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 2.0e-09 65.9 82 46.3
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 2.6e-09 65.5 68 55.9
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 3.4e-09 65.1 55 52.7
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 5.9e-09 64.3 85 48.2
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 5.9e-09 64.3 61 52.5
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 1.0e-08 63.5 54 55.6
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 1.0e-08 63.5 54 55.6
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 1.0e-08 63.5 76 48.7
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.0e-08 63.5 81 45.7
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.3e-08 63.2 52 59.6
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 1.7e-08 62.8 55 60.0
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.2e-08 62.4 85 50.6
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 2.2e-08 62.4 87 46.0
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 2.2e-08 62.4 57 57.9
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 3.8e-08 61.6 73 47.9
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.8e-08 61.6 72 47.2
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.8e-08 61.6 72 47.2
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.8e-08 61.6 72 47.2
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.1e-07 60.1 69 52.2
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.1e-07 60.1 69 52.2
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.1e-07 60.1 69 52.2
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 1.1e-07 60.1 57 56.1
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.4e-07 59.7 67 52.2
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 1.4e-07 59.7 83 48.2
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.4e-07 59.7 69 50.7
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 2.5e-07 58.9 69 50.7
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 3.2e-07 58.5 76 44.7
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 4.2e-07 58.2 85 45.9
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 1.6e-06 56.2 52 50.0
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 3.6e-06 55.1 82 40.2
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 6.1e-06 54.3 38 71.1


User provided reference genes

Program Settings