Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 6.0e-128 461.1 269 100.0
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 1.4e-68 263.8 267 65.5
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 9.1e-68 261.2 270 57.8
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.6e-64 250.4 269 57.2
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 2.7e-64 249.6 271 56.8
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 7.4e-62 241.5 268 59.0
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 5.3e-60 235.3 249 57.0
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 6.9e-60 235.0 242 57.9
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 9.1e-60 234.6 271 54.2
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 9.1e-60 234.6 266 61.7
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.5e-59 233.8 273 53.1
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 4.5e-59 232.3 270 55.9
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 7.7e-59 231.5 270 55.9
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 7.7e-59 231.5 257 56.0
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 3.8e-58 229.2 268 57.8
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 4.2e-57 225.7 247 54.3
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 1.2e-56 224.2 232 56.5
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 2.1e-56 223.4 266 53.0
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 7.9e-56 221.5 239 63.6
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 7.9e-56 221.5 277 53.1
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 1.4e-55 220.7 274 50.0
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 5.2e-55 218.8 234 64.1
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 5.2e-55 218.8 242 57.4
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 6.7e-55 218.4 258 53.5
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 6.7e-55 218.4 257 58.8
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 8.8e-55 218.0 260 53.8
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.0e-54 216.9 240 59.2
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 2.0e-54 216.9 253 55.3
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 4.4e-54 215.7 254 53.9
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 9.7e-54 214.5 254 54.7
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 1.3e-53 214.2 251 54.6
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.3e-53 214.2 294 55.8
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 1.7e-53 213.8 251 53.8
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 3.7e-53 212.6 294 55.8
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 4.8e-53 212.2 269 53.2
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 6.3e-53 211.8 274 51.1
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 6.3e-53 211.8 250 54.4
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 8.2e-53 211.5 251 53.8
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 1.1e-52 211.1 251 54.2
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 1.1e-52 211.1 250 54.0
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 1.4e-52 210.7 284 50.4
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.8e-52 210.3 271 51.3
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.8e-52 210.3 294 55.4
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 2.4e-52 209.9 252 53.2
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 2.4e-52 209.9 247 53.0
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 3.1e-52 209.5 242 53.3
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 4.1e-52 209.1 252 58.3
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 5.3e-52 208.8 239 55.6
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 7.0e-52 208.4 239 55.6
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 9.1e-52 208.0 253 53.4
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 9.1e-52 208.0 230 53.9
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 1.2e-51 207.6 258 58.1
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 1.6e-51 207.2 241 55.2
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.0e-51 206.8 249 51.8
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.6e-51 206.5 265 54.0
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 2.6e-51 206.5 255 52.2
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 7.7e-51 204.9 232 57.3
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 7.7e-51 204.9 256 52.3
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 1.0e-50 204.5 244 53.3
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.3e-50 204.1 237 56.5
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 1.7e-50 203.8 243 53.5
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 2.2e-50 203.4 248 52.8
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 2.2e-50 203.4 256 51.2
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.9e-50 203.0 268 50.0
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 3.8e-50 202.6 261 59.0
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 3.8e-50 202.6 258 53.1
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 6.5e-50 201.8 259 57.5
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 6.5e-50 201.8 326 49.1
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 8.5e-50 201.4 252 53.2
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 1.5e-49 200.7 265 49.4
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 1.9e-49 200.3 256 50.0
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 2.5e-49 199.9 239 61.1
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 5.5e-49 198.7 270 50.7
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 5.5e-49 198.7 254 51.2
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 2.1e-48 196.8 259 56.4
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 1.4e-47 194.1 251 51.8
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 2.3e-47 193.4 236 51.7
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 6.7e-47 191.8 252 50.4
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 8.8e-47 191.4 252 48.8
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 8.8e-47 191.4 218 55.0
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.2e-46 191.0 265 50.2
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 2.6e-46 189.9 232 53.4
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 4.4e-46 189.1 254 51.2
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 7.5e-46 188.3 255 55.7
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 9.7e-46 188.0 254 50.4
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 2.8e-45 186.4 255 49.8
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 3.7e-45 186.0 190 60.5
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 1.1e-44 184.5 239 51.5
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 1.1e-44 184.5 239 51.5
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 1.1e-44 184.5 228 55.3
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 5.3e-44 182.2 225 52.0
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 5.3e-44 182.2 225 52.4
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.6e-43 180.6 230 52.2
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 4.5e-43 179.1 239 50.2
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 4.5e-43 179.1 225 52.9
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 1.0e-42 177.9 179 62.0
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 2.2e-42 176.8 227 51.5
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 2.2e-42 176.8 227 51.5
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 2.2e-42 176.8 222 52.3
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.9e-42 176.4 250 49.2
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 5.0e-42 175.6 225 50.2
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 8.5e-42 174.9 242 48.8
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 1.5e-41 174.1 267 42.3
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 1.2e-40 171.0 252 46.8
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.6e-40 170.6 243 46.9
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 2.1e-40 170.2 234 54.3
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 4.7e-40 169.1 246 46.7
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 1.4e-39 167.5 226 51.8
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.5e-38 164.1 222 50.0
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 7.5e-38 161.8 246 44.3
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 3.7e-37 159.5 247 51.8
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 2.4e-36 156.8 267 41.6
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 1.2e-35 154.5 124 69.4
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 4.1e-28 129.4 122 63.9
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 7.0e-28 128.6 253 37.5
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 1.6e-27 127.5 232 37.5
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 2.3e-26 123.6 117 61.5
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 4.3e-25 119.4 168 47.6
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 4.3e-25 119.4 125 52.0
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 6.1e-24 115.5 128 52.3
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 5.2e-23 112.5 128 50.8
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 4.4e-14 82.8 121 44.6
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 3.5e-11 73.2 214 34.6
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 6.0e-11 72.4 124 42.7
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 4.4e-06 56.2 53 58.5


User provided reference genes

Program Settings