Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.5e-161 571.6 299 100.0
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 5.4e-114 414.8 300 72.0
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 3.5e-113 412.1 299 71.2
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 6.0e-113 411.4 299 71.2
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 7.9e-113 411.0 299 71.2
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 3.0e-112 409.1 296 73.0
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.9e-111 406.4 295 71.5
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 5.6e-111 404.8 299 70.2
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.1e-110 402.9 296 70.6
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.1e-110 402.9 299 69.2
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 2.8e-110 402.5 300 68.3
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 4.8e-110 401.7 295 69.5
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.1e-109 400.6 299 71.2
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 6.9e-109 397.9 293 70.6
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 6.9e-109 397.9 295 70.2
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.2e-108 397.1 298 70.1
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 1.5e-108 396.7 295 71.2
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.6e-108 396.0 295 69.5
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.6e-108 396.0 303 69.3
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.5e-108 395.2 293 69.6
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.5e-108 395.2 293 69.6
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 9.9e-108 394.0 296 68.2
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.3e-107 393.7 293 70.3
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.7e-107 393.3 292 71.9
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 3.8e-107 392.1 293 71.0
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 3.8e-107 392.1 293 68.6
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.4e-107 391.3 297 68.4
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.4e-107 391.3 296 68.6
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 6.4e-107 391.3 300 68.0
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 8.4e-107 391.0 293 68.9
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.4e-106 390.2 295 68.5
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.9e-106 389.8 297 70.0
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 2.4e-106 389.4 293 70.6
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 3.2e-106 389.0 297 69.7
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 4.2e-106 388.7 295 69.8
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 4.2e-106 388.7 299 66.9
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 5.5e-106 388.3 299 65.6
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 9.3e-106 387.5 296 67.6
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.2e-105 387.1 284 72.2
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 1.6e-105 386.7 295 69.5
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.6e-105 386.7 306 67.0
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.1e-105 386.3 296 66.9
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.7e-105 386.0 295 68.8
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 2.7e-105 386.0 295 67.1
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 3.5e-105 385.6 292 67.5
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.6e-105 385.2 292 67.5
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 4.6e-105 385.2 285 71.6
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 6.0e-105 384.8 295 68.5
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 6.0e-105 384.8 295 68.5
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.3e-104 383.6 292 67.8
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 2.3e-104 382.9 293 66.2
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 2.3e-104 382.9 237 78.1
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 6.7e-104 381.3 299 67.2
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 6.7e-104 381.3 293 67.6
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 8.7e-104 380.9 293 67.2
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 8.7e-104 380.9 295 69.8
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.1e-103 380.6 295 68.1
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.5e-103 380.2 295 67.5
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.5e-103 380.2 293 67.6
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.9e-103 379.8 296 69.3
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 3.3e-103 379.0 293 68.6
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 3.3e-103 379.0 293 68.6
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.3e-103 379.0 293 67.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.3e-103 379.0 293 67.2
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 4.3e-103 378.6 288 68.4
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 5.6e-103 378.3 332 63.0
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 5.6e-103 378.3 322 64.3
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 5.6e-103 378.3 293 67.6
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.4e-103 377.9 293 66.6
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 9.6e-103 377.5 295 67.8
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.3e-102 377.1 293 67.9
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.3e-102 377.1 293 67.9
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.6e-102 376.7 301 65.8
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.6e-102 376.7 285 70.5
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.1e-102 376.3 291 67.0
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 2.1e-102 376.3 301 67.1
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 2.1e-102 376.3 276 69.6
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.8e-102 375.9 291 69.1
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.8e-102 375.9 289 69.6
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 3.7e-102 375.6 296 67.2
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 4.8e-102 375.2 298 67.1
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 4.8e-102 375.2 295 68.8
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 4.8e-102 375.2 295 67.5
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 6.2e-102 374.8 294 68.4
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 6.2e-102 374.8 293 67.6
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 8.2e-102 374.4 308 65.3
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 1.4e-101 373.6 289 68.9
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.8e-101 373.2 296 66.2
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 3.1e-101 372.5 296 67.2
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 3.1e-101 372.5 296 66.9
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 4.0e-101 372.1 295 65.1
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 4.0e-101 372.1 289 67.1
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 5.3e-101 371.7 290 67.9
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 6.9e-101 371.3 294 66.7
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 6.9e-101 371.3 297 67.0
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 9.0e-101 370.9 305 66.6
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.2e-100 370.5 297 68.7
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.5e-100 370.2 298 65.8
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 3.4e-100 369.0 295 67.8
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 7.6e-100 367.9 297 66.3
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.3e-99 367.1 277 70.0
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.3e-99 367.1 277 70.0
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.2e-99 366.3 285 69.5
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 4.9e-99 365.2 296 64.9
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 4.9e-99 365.2 260 70.0
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.9e-99 365.2 290 67.2
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 2.5e-98 362.8 292 67.1
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 7.1e-98 361.3 297 65.3
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 7.1e-98 361.3 289 67.8
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 7.1e-98 361.3 292 65.4
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 2.7e-97 359.4 304 61.8
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.3e-96 356.3 349 57.3
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 8.7e-96 354.4 357 56.6
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 1.9e-95 353.2 355 56.3
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 2.5e-95 352.8 230 75.7
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 5.7e-95 351.7 349 56.7
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 7.4e-95 351.3 296 62.8
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 9.7e-95 350.9 270 69.3
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 1.4e-93 347.1 224 78.6
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.2e-92 344.0 302 62.9
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.0e-91 340.9 329 58.7
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.1e-90 337.4 267 66.7
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 9.4e-90 334.3 296 62.5
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.2e-89 334.0 292 62.0
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.0e-88 329.3 229 72.9
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 2.5e-87 326.2 292 60.3
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 3.3e-87 325.9 230 73.5
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 7.4e-87 324.7 203 78.8
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 9.4e-82 307.8 230 67.8
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-81 307.4 293 57.7
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.6e-81 307.0 219 72.1
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 2.1e-81 306.6 295 59.7
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 7.4e-79 298.1 227 66.5
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 1.3e-78 297.4 190 77.9
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 3.7e-78 295.8 273 60.4
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.8e-77 293.5 201 70.6
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.7e-73 279.6 231 62.3
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.8e-72 276.9 230 64.3
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.6e-68 263.8 265 56.6
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.7e-65 253.1 266 55.3
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.7e-59 233.8 187 65.2
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.2e-57 227.6 193 61.7
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 1.5e-55 220.7 226 53.1
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.1e-53 214.5 219 50.2
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 6.1e-49 198.7 181 58.0
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 8.0e-49 198.4 219 50.7
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 3.0e-48 196.4 150 65.3
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 2.3e-40 170.2 220 45.5
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 9.8e-39 164.9 162 56.2
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 3.1e-24 116.7 70 80.0
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.9e-22 110.2 93 66.7
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 1.3e-19 101.3 59 86.4
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.5e-15 87.8 157 38.2
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 3.8e-14 83.2 121 43.8
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 2.3e-11 73.9 48 70.8
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 7.3e-10 68.9 47 74.5


User provided reference genes

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