Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.9e-33 144.1 65 100.0
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.1e-15 85.1 46 82.6
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 3.5e-10 67.8 57 54.4
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 3.5e-10 67.8 46 69.6
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 4.6e-10 67.4 57 54.4
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 6.1e-10 67.0 46 65.2
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 1.0e-09 66.2 46 67.4
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 1.3e-09 65.9 46 63.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 1.8e-09 65.5 57 57.9
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.8e-09 65.5 46 65.2
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 1.8e-09 65.5 43 69.8
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.9e-09 64.3 46 63.0
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 5.1e-09 63.9 57 56.1
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 8.7e-09 63.2 46 67.4
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 8.7e-09 63.2 46 67.4
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 8.7e-09 63.2 46 58.7
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 8.7e-09 63.2 32 87.5
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 1.1e-08 62.8 39 69.2
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 1.1e-08 62.8 43 67.4
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.1e-08 62.8 46 60.9
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.5e-08 62.4 46 58.7
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.5e-08 62.4 43 67.4
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 1.5e-08 62.4 43 67.4
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 1.9e-08 62.0 36 72.2
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 1.9e-08 62.0 46 58.7
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 1.9e-08 62.0 57 52.6
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 1.9e-08 62.0 37 70.3
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 2.5e-08 61.6 46 65.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 2.5e-08 61.6 46 60.9
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 3.3e-08 61.2 57 52.6
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 3.3e-08 61.2 46 58.7
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 3.3e-08 61.2 43 69.8
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 3.3e-08 61.2 43 67.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 3.3e-08 61.2 33 81.8
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 3.3e-08 61.2 57 52.6
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 4.3e-08 60.8 46 63.0
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 4.3e-08 60.8 32 84.4
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 4.3e-08 60.8 43 67.4
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 4.3e-08 60.8 43 65.1
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 5.7e-08 60.5 35 68.6
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 5.7e-08 60.5 46 60.9
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 5.7e-08 60.5 46 65.2
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.7e-08 60.5 46 63.0
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 5.7e-08 60.5 46 63.0
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.7e-08 60.5 46 58.7
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.7e-08 60.5 46 58.7
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 7.4e-08 60.1 34 79.4
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 7.4e-08 60.1 46 56.5
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 7.4e-08 60.1 46 67.4
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 9.7e-08 59.7 37 67.6
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 9.7e-08 59.7 46 58.7
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 1.3e-07 59.3 32 81.2
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 1.3e-07 59.3 32 81.2
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 1.3e-07 59.3 46 56.5
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 1.3e-07 59.3 46 56.5
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 1.3e-07 59.3 36 72.2
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 1.6e-07 58.9 44 65.9
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 1.6e-07 58.9 32 78.1
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 1.6e-07 58.9 44 65.9
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 1.6e-07 58.9 32 78.1
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 1.6e-07 58.9 41 63.4
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 1.6e-07 58.9 45 60.0
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 1.6e-07 58.9 37 67.6
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 2.2e-07 58.5 32 81.2
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 2.2e-07 58.5 32 81.2
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 2.2e-07 58.5 32 81.2
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 2.2e-07 58.5 34 73.5
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 2.2e-07 58.5 43 60.5
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 2.2e-07 58.5 43 60.5
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 2.2e-07 58.5 37 64.9
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 2.8e-07 58.2 32 78.1
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 2.8e-07 58.2 46 56.5
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 2.8e-07 58.2 35 68.6
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 2.8e-07 58.2 43 60.5
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 2.8e-07 58.2 42 61.9
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 2.8e-07 58.2 42 61.9
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 2.8e-07 58.2 46 54.3
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 3.7e-07 57.8 46 58.7
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 3.7e-07 57.8 42 61.9
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 3.7e-07 57.8 39 64.1
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 3.7e-07 57.8 46 58.7
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 4.8e-07 57.4 44 63.6
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 4.8e-07 57.4 35 68.6
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 4.8e-07 57.4 35 68.6
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 6.3e-07 57.0 46 63.0
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 6.3e-07 57.0 39 64.1
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 6.3e-07 57.0 39 64.1
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 6.3e-07 57.0 39 64.1
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 6.3e-07 57.0 39 64.1
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 6.3e-07 57.0 49 53.1
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 8.2e-07 56.6 49 57.1
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 8.2e-07 56.6 49 57.1
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.2e-07 56.6 46 52.2
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.2e-07 56.6 46 52.2
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.1e-06 56.2 46 58.7
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 1.1e-06 56.2 60 48.3
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-06 56.2 46 50.0
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 1.1e-06 56.2 46 54.3
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 1.1e-06 56.2 46 54.3
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 1.8e-06 55.5 43 58.1
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 1.8e-06 55.5 39 61.5
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 3.1e-06 54.7 32 68.8
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 3.1e-06 54.7 32 68.8
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 3.1e-06 54.7 32 68.8
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 3.1e-06 54.7 32 68.8
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 3.1e-06 54.7 32 68.8
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 3.1e-06 54.7 35 65.7
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 5.3e-06 53.9 41 58.5
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 5.3e-06 53.9 39 64.1
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.3e-06 53.9 46 54.3
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 6.9e-06 53.5 46 50.0


User provided reference genes

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