Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G038 Amborella trichopoda HOM05D002962 ORTHO05D003280 2.1e-109 399.1 204 100.0
TAR376G0270 Trochodendron aralioides HOM05D002962 ORTHO05D003280 3.5e-19 99.4 226 35.4
Lalb_Chr05g0212661 Lupinus albus HOM05D002962 ORTHO05D003280 7.7e-19 98.2 240 33.8
Lj4g0019305 Lotus japonicus HOM05D002962 ORTHO05D003280 5.0e-18 95.5 249 32.9
ATR0568G222 Amborella trichopoda HOM05D002962 ORTHO05D003280 6.5e-18 95.1 234 35.5
Haze_15064 Corylus avellana HOM05D002962 ORTHO05D003280 8.5e-18 94.7 240 34.6
Sed0024753 Sechium edule HOM05D002962 ORTHO05D003280 1.1e-17 94.4 221 34.8
Lalb_Chr09g0333421 Lupinus albus HOM05D002962 ORTHO05D003280 2.5e-17 93.2 235 33.6
HanXRQChr09g0261381 Helianthus annuus HOM05D002962 ORTHO05D003280 3.2e-17 92.8 218 34.9
Cpa.g.sc36.5 Carica papaya HOM05D002962 ORTHO05D003280 5.5e-17 92.0 263 30.4
Cfa004337 Carpinus fangiana HOM05D002962 ORTHO05D003280 5.5e-17 92.0 243 34.6
MBI18_g28939_MAGBIO Magnolia biondii HOM05D002962 ORTHO05D003280 5.5e-17 92.0 213 35.2
QL06p047095 Quercus lobata HOM05D002962 ORTHO05D003280 7.2e-17 91.7 248 33.1
Glyma.01G172000 Glycine max HOM05D002962 ORTHO05D003280 9.4e-17 91.3 238 33.2
CSS0034307 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 1.6e-16 90.5 255 32.5
MELO3C007841.2 Cucumis melo HOM05D002962 ORTHO05D003280 1.6e-16 90.5 265 34.3
Psat4g094840 Pisum sativum HOM05D002962 ORTHO05D003280 2.1e-16 90.1 242 31.4
Lj2g0023270 Lotus japonicus HOM05D002962 ORTHO05D003280 2.7e-16 89.7 229 32.8
Ca_22294_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 6.1e-16 88.6 238 31.9
Ca_22324_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 6.1e-16 88.6 238 31.9
CsaV3_6G046440 Cucumis sativus L. HOM05D002962 ORTHO05D003280 8.0e-16 88.2 265 34.7
Lj9C586T8 Lonicera japonica HOM05D002962 ORTHO05D003280 1.0e-15 87.8 240 33.3
Phvul.003G255500 Phaseolus vulgaris HOM05D002962 ORTHO05D003280 1.4e-15 87.4 245 31.8
CiPaw.02G020000 Carya illinoinensis HOM05D002962 ORTHO05D003280 2.3e-15 86.7 255 30.6
Eucgr.I02415 Eucalyptus grandis HOM05D002962 ORTHO05D003280 3.0e-15 86.3 256 31.6
Nn1g04926 Nelumbo nucifera HOM05D002962 ORTHO05D003280 3.0e-15 86.3 225 36.0
Hma1.2p1_0224F.1_g094470 Hydrangea macrophylla HOM05D002962 ORTHO05D003280 5.2e-15 85.5 239 32.6
vmacro17814 Vaccinium macrocarpon HOM05D002962 ORTHO05D003280 6.7e-15 85.1 243 30.9
ClCG01G019720 Citrullus lanatus HOM05D002962 ORTHO05D003280 8.8e-15 84.7 264 31.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.2e-14 84.3 246 32.9
ECA232G3627 Erigeron canadensis HOM05D002962 ORTHO05D003003 1.5e-14 84.0 256 30.1
Prupe.7G157800 Prunus persica HOM05D002962 ORTHO05D003280 1.5e-14 84.0 275 29.8
CDE02G1522 Ceratophyllum demersum HOM05D002962 ORTHO05D003280 2.0e-14 83.6 209 36.8
VMungo0251G3100 Vigna mungo HOM05D002962 ORTHO05D003280 2.0e-14 83.6 245 29.8
arahy.Tifrunner.gnm1.ann1.IG7GIS Arachis hypogaea HOM05D002962 ORTHO05D003280 4.4e-14 82.4 240 31.2
Manes.01G137800 Manihot esculenta HOM05D002962 ORTHO05D003280 4.4e-14 82.4 267 29.6
arahy.Tifrunner.gnm1.ann1.6ZAY02 Arachis hypogaea HOM05D002962 ORTHO05D003280 5.7e-14 82.0 240 31.2
CiPaw.01G044300 Carya illinoinensis HOM05D002962 ORTHO05D003280 5.7e-14 82.0 254 31.5
PGR102G1557 Punica granatum HOM05D002962 ORTHO05D003280 5.7e-14 82.0 255 31.4
Lalb_Chr09g0322191 Lupinus albus HOM05D002962 ORTHO05D003280 9.7e-14 81.3 238 32.4
TPR.G2377 Trifolium pratense HOM05D002962 ORTHO05D003280 9.7e-14 81.3 245 34.3
Medtr8g077135 Medicago truncatula HOM05D002962 ORTHO05D003280 1.3e-13 80.9 247 32.0
Sed0002223 Sechium edule HOM05D002962 ORTHO05D003280 2.2e-13 80.1 264 31.4
C08p26120 Brassica napus HOM05D002962 ORTHO05D003280 2.8e-13 79.7 225 30.7
Ca_24872_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 2.8e-13 79.7 243 30.9
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 3.7e-13 79.3 257 28.8
Cpa.g.sc6.150 Carica papaya HOM05D002962 ORTHO05D003280 3.7e-13 79.3 273 30.0
RcHm_v2.0_Chr2g0100981 Rosa chinensis HOM05D002962 ORTHO05D003280 4.8e-13 79.0 273 29.3
HPP92_019941 Vanilla planifolia HOM05D002962 ORTHO05D003280 8.2e-13 78.2 227 32.2
BcaC07g39559 Brassica carinata HOM05D002962 ORTHO05D003280 1.1e-12 77.8 226 30.5
BolC8t50230H Brassica oleracea HOM05D002962 ORTHO05D003280 1.4e-12 77.4 227 30.4
Nitab4.5_0001617g0050 Nicotiana tabacum HOM05D002962 ORTHO05D003280 1.8e-12 77.0 189 31.7
GSVIVG01018925001 Vitis vinifera HOM05D002962 ORTHO05D003280 3.1e-12 76.3 247 30.0
Duzib147G1401 Durio zibethinus HOM05D002962 ORTHO05D003280 5.3e-12 75.5 273 30.4
Nitab4.5_0000178g0300 Nicotiana tabacum HOM05D002962 ORTHO05D003280 5.3e-12 75.5 190 33.7
Oeu061916.1 Olea europaea HOM05D002962 ORTHO05D003280 5.3e-12 75.5 207 34.3
TWI73G0991 Tripterygium wilfordii HOM05D002962 ORTHO05D003280 7.0e-12 75.1 251 30.3
Glyma.16G135000 Glycine max HOM05D002962 ORTHO05D003280 9.1e-12 74.7 244 29.5
Sc16g0002600 Simmondsia chinensis HOM05D002962 ORTHO05D003280 9.1e-12 74.7 253 31.2
Medtr5g020870 Medicago truncatula HOM05D002962 ORTHO05D003280 1.2e-11 74.3 247 32.4
Hund16634 Selenicereus undatus HOM05D002962 ORTHO05D003280 1.6e-11 73.9 270 31.9
Duzib187G1402 Durio zibethinus HOM05D002962 ORTHO05D003280 2.7e-11 73.2 246 32.5
HanXRQChr14g0440561 Helianthus annuus HOM05D002962 ORTHO05D003280 2.7e-11 73.2 226 31.0
TWI09G0980 Tripterygium wilfordii HOM05D002962 ORTHO05D003280 3.5e-11 72.8 276 30.1
Gohir.A12G063600 Gossypium hirsutum HOM05D002962 ORTHO05D003280 4.5e-11 72.4 249 29.7
VMungo1215G0433 Vigna mungo HOM05D002962 ORTHO05D003280 5.9e-11 72.0 212 28.3
FAN23G2353 Fragaria x ananassa HOM05D002962 ORTHO05D003280 7.7e-11 71.6 279 28.0
Gohir.D12G063400 Gossypium hirsutum HOM05D002962 ORTHO05D003280 7.7e-11 71.6 152 38.2
Gorai.008G066700 Gossypium raimondii HOM05D002962 ORTHO05D003280 7.7e-11 71.6 152 38.2
Solyc02g085000.3 Solanum lycopersicum HOM05D002962 ORTHO05D003280 7.7e-11 71.6 260 26.9
CANSAT01G3016 Cannabis sativa HOM05D002962 ORTHO05D003280 1.0e-10 71.2 267 27.0
Manes.02G096200 Manihot esculenta HOM05D002962 ORTHO05D003280 1.0e-10 71.2 277 28.5
Duzib264G0441 Durio zibethinus HOM05D002962 ORTHO05D003280 2.9e-10 69.7 249 28.9
Gohir.A02G167000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 3.8e-10 69.3 241 31.1
Sopen01g044940 Solanum pennellii HOM05D002962 ORTHO05D003280 3.8e-10 69.3 207 32.4
Ciclev10025466m.g Citrus clementina HOM05D002962 ORTHO05D003280 5.0e-10 68.9 290 26.6
Nn5g29667 Nelumbo nucifera HOM05D002962 ORTHO05D003280 5.0e-10 68.9 217 30.9
Lsat_1_v5_gn_4_152501 Lactuca sativa HOM05D002962 ORTHO05D003280 6.5e-10 68.6 259 30.9
COL.COLO4_22042 Corchorus olitorius HOM05D002962 ORTHO05D003280 1.1e-09 67.8 150 38.0
Lsat_1_v5_gn_9_84201 Lactuca sativa HOM05D002962 ORTHO05D003280 1.1e-09 67.8 221 35.3
Peaxi162Scf00366g00712 Petunia axillaris HOM05D002962 ORTHO05D003280 1.1e-09 67.8 189 32.3
THA.LOC104819203 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 1.1e-09 67.8 267 29.2
CSS0019880 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 1.5e-09 67.4 223 34.5
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 1.5e-09 67.4 210 33.8
PGSC0003DMG400003520 Solanum tuberosum HOM05D002962 ORTHO05D003280 1.5e-09 67.4 193 28.5
CSS0004345 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 1.9e-09 67.0 224 34.4
CAN.G1379.34 Capsicum annuum HOM05D002962 ORTHO05D003280 1.9e-09 67.0 205 32.2
ECA238G1910 Erigeron canadensis HOM05D002962 ORTHO05D003280 1.9e-09 67.0 166 33.7
SGA_v2.0_scaffold12G06303 Striga asiatica HOM05D002962 ORTHO05D003280 1.9e-09 67.0 260 30.0
Solyc01g102500.3 Solanum lycopersicum HOM05D002962 ORTHO05D003280 2.5e-09 66.6 207 31.4
Thecc.01G031700 Theobroma cacao HOM05D002962 ORTHO05D003280 2.5e-09 66.6 280 26.8
TAR362G0986 Trochodendron aralioides HOM05D002962 ORTHO05D003280 2.5e-09 66.6 210 32.9
unitig_736.g22639 Utricularia gibba HOM05D002962 ORTHO05D003280 2.5e-09 66.6 206 31.1
EL10As8g23915 Beta vulgaris HOM05D006011 ORTHO05D007421 3.2e-09 66.2 197 29.4
A09p44020 Brassica napus HOM05D002962 ORTHO05D003280 3.2e-09 66.2 237 27.8
BraA09t39860Z Brassica rapa HOM05D002962 ORTHO05D003280 3.2e-09 66.2 237 27.8
Oeu012899.1 Olea europaea HOM05D002962 ORTHO05D003280 4.2e-09 65.9 268 28.4
Sopen02g029680 Solanum pennellii HOM05D002962 ORTHO05D003280 4.2e-09 65.9 277 25.6
Gorai.003G013300 Gossypium raimondii HOM05D002962 ORTHO05D003280 5.5e-09 65.5 242 27.7
PGSC0003DMG400018228 Solanum tuberosum HOM05D002962 ORTHO05D003280 5.5e-09 65.5 204 30.4
DCAR_017305 Daucus carota HOM05D002962 ORTHO05D003280 7.2e-09 65.1 261 26.8
Gohir.D03G013000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 7.2e-09 65.1 243 30.9
Lsat_1_v5_gn_2_77380 Lactuca sativa HOM05D002962 ORTHO05D003280 7.2e-09 65.1 217 33.6
BcaB01g00566 Brassica carinata HOM05D002962 ORTHO05D003280 1.2e-08 64.3 245 26.9
PSO541G2482 Papaver somniferum HOM05D002962 ORTHO05D003280 1.2e-08 64.3 108 43.5
Atru.chr3.625 Acer truncatum HOM05D002962 ORTHO05D003280 1.6e-08 63.9 277 28.9
SEGI_32683 Sequoiadendron giganteum HOM05D002962 ORTHO05D003280 1.6e-08 63.9 228 31.1
SGA_v2.0_scaffold658G53389 Striga asiatica HOM05D002962 ORTHO05D003280 1.6e-08 63.9 201 29.9
Ah.02g125020 Amaranthus hybridus HOM05D002962 ORTHO05D003280 2.1e-08 63.5 232 30.6
BcaC09g50053 Brassica carinata HOM05D002962 ORTHO05D003280 2.1e-08 63.5 254 26.4
Cc07_g09830 Coffea canephora HOM05D002962 ORTHO05D003280 2.1e-08 63.5 273 27.5
Migut.H02529 Erythranthe guttata HOM05D002962 ORTHO05D003280 2.1e-08 63.5 206 31.6
MBI12_g33189_MAGBIO Magnolia biondii HOM05D002962 ORTHO05D003280 2.1e-08 63.5 127 38.6
BolC1t02897H Brassica oleracea HOM05D002962 ORTHO05D003280 2.7e-08 63.2 254 26.4
A03p48020 Brassica napus HOM05D002962 ORTHO05D003280 3.6e-08 62.8 206 28.6
BraA03t13910Z Brassica rapa HOM05D002962 ORTHO05D003280 3.6e-08 62.8 206 29.1
Nitab4.5_0000399g0060 Nicotiana tabacum HOM05D002962 ORTHO05D003280 3.6e-08 62.8 209 33.0
Peaxi162Scf00194g00630 Petunia axillaris HOM05D002962 ORTHO05D003280 3.6e-08 62.8 206 33.0
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 4.7e-08 62.4 116 38.8
SalBow8G0268 Salvia bowleyana HOM05D002962 ORTHO05D003280 4.7e-08 62.4 206 31.1
SGA_v2.0_scaffold521G52698 Striga asiatica HOM05D002962 ORTHO05D003280 4.7e-08 62.4 215 29.3
AL5G31270 Arabidopsis lyrata HOM05D002962 ORTHO05D003280 1.0e-07 61.2 263 27.8
FAN28G2586 Fragaria x ananassa HOM05D002962 ORTHO05D003280 1.0e-07 61.2 293 26.3
Psat2g157840 Pisum sativum HOM05D002962 ORTHO05D003280 1.0e-07 61.2 241 28.2
SalBow4G2363 Salvia bowleyana HOM05D002962 ORTHO05D003280 1.0e-07 61.2 189 33.9
C01p29540 Brassica napus HOM05D002962 ORTHO05D003280 1.4e-07 60.8 253 26.1
FAN26G1847 Fragaria x ananassa HOM05D002962 ORTHO05D003280 1.4e-07 60.8 294 26.9
Potri.007G022100 Populus trichocarpa HOM05D002962 ORTHO05D003280 1.4e-07 60.8 285 26.0
PGR119G1115 Punica granatum HOM05D002962 ORTHO05D003280 1.4e-07 60.8 259 26.3
SalBow4G1932 Salvia bowleyana HOM05D002962 ORTHO05D003280 1.4e-07 60.8 185 34.6
VMungo1396G0001 Vigna mungo HOM05D002962 ORTHO05D003280 1.4e-07 60.8 212 26.9
Carub.0005s1730 Capsella rubella HOM05D002962 ORTHO05D003280 1.8e-07 60.5 255 27.8
CAN.G358.53 Capsicum annuum HOM05D002962 ORTHO05D003280 1.8e-07 60.5 194 27.3
Nitab4.5_0004090g0080 Nicotiana tabacum HOM05D002962 ORTHO05D003280 2.3e-07 60.1 179 34.1
Aa31LG4G19010 Aethionema arabicum HOM05D002962 ORTHO05D003280 3.0e-07 59.7 262 26.7
BolC7t45121H Brassica oleracea HOM05D002962 ORTHO05D003280 3.0e-07 59.7 211 27.5
Cc02_g36860 Coffea canephora HOM05D002962 ORTHO05D003280 3.0e-07 59.7 100 42.0
Oeu027437.1 Olea europaea HOM05D002962 ORTHO05D003280 3.0e-07 59.7 274 27.4
ECA236G1860 Erigeron canadensis HOM05D002962 ORTHO05D003280 4.0e-07 59.3 214 33.6
Thhalv10010373m.g Eutrema salsugineum HOM05D002962 ORTHO05D003280 4.0e-07 59.3 238 27.3
CDE08G1531 Ceratophyllum demersum HOM05D002962 ORTHO05D003280 5.2e-07 58.9 208 33.2
Potri.005G120600 Populus trichocarpa HOM05D002962 ORTHO05D003280 6.8e-07 58.5 150 36.0
C07p46030 Brassica napus HOM05D002962 ORTHO05D003280 8.8e-07 58.2 210 28.1
Hma1.2p1_0157F.1_g069450 Hydrangea macrophylla HOM05D002962 ORTHO05D003280 8.8e-07 58.2 214 31.8
BcaC06g33069 Brassica carinata HOM05D002962 ORTHO05D003280 1.2e-06 57.8 209 26.3
BcaC06g33332 Brassica carinata HOM05D002962 ORTHO05D003280 1.2e-06 57.8 209 26.3
Sp5g11320 Schrenkiella parvula HOM05D002962 ORTHO05D003280 1.2e-06 57.8 241 28.2
DCAR_029784 Daucus carota HOM05D002962 ORTHO05D003280 1.5e-06 57.4 213 34.3
Migut.N00996 Erythranthe guttata HOM05D002962 ORTHO05D003280 2.0e-06 57.0 83 43.4
Eucgr.H03321 Eucalyptus grandis HOM05D002962 ORTHO05D003280 2.0e-06 57.0 252 27.4
Zm00001eb252010 Zea mays HOM05D002962 ORTHO05D003280 2.6e-06 56.6 95 40.0
Ah.03g141110 Amaranthus hybridus HOM05D002962 ORTHO05D003280 4.4e-06 55.8 192 28.6
AT3G50910 Arabidopsis thaliana HOM05D002962 ORTHO05D003280 4.4e-06 55.8 240 27.5
Nn4g25253 Nelumbo nucifera HOM05D002962 ORTHO05D003280 4.4e-06 55.8 235 31.9
Nn4g25254 Nelumbo nucifera HOM05D002962 ORTHO05D003280 4.4e-06 55.8 235 31.9
MSTRG.2480 Avicennia marina HOM05D002962 ORTHO05D003280 5.7e-06 55.5 206 28.2
HanXRQChr07g0193731 Helianthus annuus HOM05D002962 ORTHO05D003280 5.7e-06 55.5 91 47.3
Sabra05G0099400 Salix brachista HOM05D002962 ORTHO05D003280 5.7e-06 55.5 148 33.1
FvH4_1g12900 Fragaria vesca HOM05D002962 ORTHO05D003280 9.8e-06 54.7 291 26.1
PSO170G2280 Papaver somniferum HOM05D002962 ORTHO05D003280 9.8e-06 54.7 234 26.5
SGA_v2.0_scaffold311G48235 Striga asiatica HOM05D002962 ORTHO05D003280 9.8e-06 54.7 201 28.4


User provided reference genes

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