Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 4.5e-68 261.2 135 100.0
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.5e-18 95.9 134 47.0
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 2.6e-15 85.9 116 46.6
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 9.9e-15 84.0 134 45.5
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 1.4e-13 80.1 133 45.9
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.4e-13 80.1 125 44.0
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 3.2e-13 79.0 137 43.8
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 5.5e-13 78.2 128 45.3
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 5.5e-13 78.2 125 40.0
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 9.3e-13 77.4 131 42.0
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 9.3e-13 77.4 119 44.5
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.2e-12 77.0 82 56.1
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.6e-12 76.6 116 40.5
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 1.6e-12 76.6 95 50.5
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 3.5e-12 75.5 119 47.9
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 3.5e-12 75.5 96 45.8
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 3.5e-12 75.5 109 44.0
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 3.5e-12 75.5 62 61.3
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 6.0e-12 74.7 133 41.4
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 7.9e-12 74.3 76 55.3
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 1.0e-11 73.9 141 43.3
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 1.8e-11 73.2 51 72.5
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 3.0e-11 72.4 96 43.8
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 3.0e-11 72.4 74 52.7
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 3.9e-11 72.0 109 41.3
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 3.9e-11 72.0 73 53.4
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 5.1e-11 71.6 74 52.7
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 5.1e-11 71.6 127 39.4
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 5.1e-11 71.6 123 44.7
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 6.7e-11 71.2 145 38.6
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 6.7e-11 71.2 72 56.9
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 8.7e-11 70.9 134 39.6
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.1e-10 70.5 88 45.5
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.1e-10 70.5 88 45.5
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.1e-10 70.5 88 45.5
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 1.1e-10 70.5 126 43.7
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 1.5e-10 70.1 66 54.5
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.5e-10 70.1 74 51.4
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.5e-10 70.1 73 52.1
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.5e-10 70.1 73 52.1
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.9e-10 69.7 90 47.8
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 1.9e-10 69.7 133 39.1
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 2.5e-10 69.3 95 44.2
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 4.3e-10 68.6 74 51.4
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 5.6e-10 68.2 88 52.3
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 5.6e-10 68.2 125 36.8
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 7.4e-10 67.8 85 47.1
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 7.4e-10 67.8 73 50.7
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 7.4e-10 67.8 122 39.3
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 7.4e-10 67.8 129 41.1
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 7.4e-10 67.8 133 42.1
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 9.6e-10 67.4 127 39.4
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.3e-09 67.0 69 52.2
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 1.6e-09 66.6 92 44.6
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 1.6e-09 66.6 76 51.3
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 2.1e-09 66.2 87 46.0
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.8e-09 65.9 87 47.1
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.8e-09 65.9 87 47.1
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 2.8e-09 65.9 87 47.1
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 2.8e-09 65.9 66 51.5
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 2.8e-09 65.9 59 54.2
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 3.7e-09 65.5 60 55.0
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 3.7e-09 65.5 125 40.0
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 3.7e-09 65.5 69 52.2
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 4.8e-09 65.1 86 47.7
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 4.8e-09 65.1 85 45.9
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 4.8e-09 65.1 127 37.8
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 6.2e-09 64.7 62 56.5
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 6.2e-09 64.7 81 45.7
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 1.1e-08 63.9 86 46.5
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 1.1e-08 63.9 86 46.5
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 1.1e-08 63.9 86 46.5
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 1.1e-08 63.9 110 39.1
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 1.4e-08 63.5 86 46.5
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 2.4e-08 62.8 88 43.2
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 2.4e-08 62.8 66 50.0
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 2.4e-08 62.8 69 47.8
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 2.4e-08 62.8 69 47.8
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 3.1e-08 62.4 87 43.7
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 3.1e-08 62.4 123 40.7
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 4.0e-08 62.0 94 40.4
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 4.0e-08 62.0 81 44.4
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 4.0e-08 62.0 137 38.7
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 4.0e-08 62.0 133 41.4
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 5.3e-08 61.6 88 44.3
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 5.3e-08 61.6 86 45.3
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 5.3e-08 61.6 80 47.5
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 5.3e-08 61.6 137 38.7
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 5.3e-08 61.6 103 42.7
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 5.3e-08 61.6 91 41.8
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 6.9e-08 61.2 81 45.7
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 6.9e-08 61.2 63 55.6
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 6.9e-08 61.2 81 48.1
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 6.9e-08 61.2 63 55.6
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 9.0e-08 60.8 87 42.5
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 9.0e-08 60.8 86 45.3
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 1.5e-07 60.1 96 36.5
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 1.5e-07 60.1 83 45.8
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 2.0e-07 59.7 48 58.3
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 2.0e-07 59.7 93 43.0
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 2.0e-07 59.7 53 60.4
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 2.6e-07 59.3 83 47.0
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 2.6e-07 59.3 106 38.7
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 3.4e-07 58.9 59 50.8
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 3.4e-07 58.9 108 41.7
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 3.4e-07 58.9 80 45.0
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 4.5e-07 58.5 72 45.8
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 4.5e-07 58.5 79 43.0
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 4.5e-07 58.5 97 37.1
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 7.6e-07 57.8 69 44.9
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 7.6e-07 57.8 59 49.2
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 1.0e-06 57.4 63 47.6
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.0e-06 57.4 48 54.2
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 1.0e-06 57.4 48 54.2
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.3e-06 57.0 90 40.0
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.3e-06 57.0 48 54.2
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.3e-06 57.0 59 47.5
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 1.7e-06 56.6 87 40.2
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 1.7e-06 56.6 48 56.2
Gohir.A04G137350 Gossypium hirsutum HOM05D034510 ORTHO05D008112 1.7e-06 56.6 72 41.7
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 1.7e-06 56.6 51 52.9
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.7e-06 56.6 49 53.1
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.7e-06 56.6 48 54.2
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 2.2e-06 56.2 90 41.1
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.2e-06 56.2 57 40.4
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 2.2e-06 56.2 93 44.1
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 2.9e-06 55.8 68 41.2
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 2.9e-06 55.8 63 44.4
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 2.9e-06 55.8 100 40.0
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.9e-06 55.8 48 52.1
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 2.9e-06 55.8 95 38.9
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 2.9e-06 55.8 68 41.2
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 2.9e-06 55.8 122 36.1
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 3.8e-06 55.5 94 37.2
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 3.8e-06 55.5 91 42.9
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 3.8e-06 55.5 47 51.1
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 3.8e-06 55.5 104 39.4
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.9e-06 55.1 49 51.0
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.9e-06 55.1 49 51.0
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 6.5e-06 54.7 97 35.1
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 6.5e-06 54.7 48 50.0
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 8.4e-06 54.3 102 37.3
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 8.4e-06 54.3 88 39.8
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 8.4e-06 54.3 87 42.5


User provided reference genes

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