Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.9e-77 292.4 142 100.0
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 9.0e-59 230.3 154 77.3
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 1.3e-25 120.2 127 49.6
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 1.3e-25 120.2 126 49.2
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 4.2e-24 115.2 133 48.9
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 5.5e-24 114.8 163 41.1
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 1.6e-23 113.2 139 47.5
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 3.6e-23 112.1 134 48.5
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 1.0e-22 110.5 135 51.1
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 2.3e-22 109.4 139 46.8
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 4.0e-22 108.6 134 47.8
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 5.2e-22 108.2 138 44.9
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 6.8e-22 107.8 139 46.0
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 6.8e-22 107.8 139 46.0
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 1.2e-21 107.1 99 51.5
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 1.5e-21 106.7 106 53.8
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 1.5e-21 106.7 139 45.3
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 2.0e-21 106.3 145 44.8
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 3.4e-21 105.5 99 50.5
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 7.5e-21 104.4 103 51.5
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 1.3e-20 103.6 106 50.9
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 1.7e-20 103.2 153 39.9
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 1.7e-20 103.2 147 44.9
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 1.7e-20 103.2 107 51.4
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 2.8e-20 102.4 135 43.0
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 2.8e-20 102.4 107 48.6
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 6.3e-20 101.3 107 49.5
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 6.3e-20 101.3 153 39.2
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 6.3e-20 101.3 138 42.0
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 8.3e-20 100.9 132 43.2
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 8.3e-20 100.9 107 50.5
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 8.3e-20 100.9 137 44.5
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 1.1e-19 100.5 101 50.5
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 1.1e-19 100.5 107 48.6
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.4e-19 100.1 107 50.5
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 1.4e-19 100.1 148 40.5
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 1.4e-19 100.1 107 51.4
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 1.8e-19 99.8 138 45.7
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 2.4e-19 99.4 100 48.0
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 5.4e-19 98.2 107 49.5
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 5.4e-19 98.2 109 51.4
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 5.4e-19 98.2 100 49.0
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 5.4e-19 98.2 144 42.4
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 7.0e-19 97.8 141 41.1
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 7.0e-19 97.8 101 50.5
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 7.0e-19 97.8 138 42.8
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 7.0e-19 97.8 105 49.5
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 9.1e-19 97.4 107 49.5
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 1.2e-18 97.1 107 47.7
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 1.2e-18 97.1 103 48.5
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 1.2e-18 97.1 107 48.6
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 2.7e-18 95.9 107 48.6
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 3.5e-18 95.5 133 43.6
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 3.5e-18 95.5 138 42.8
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 3.5e-18 95.5 107 48.6
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 4.5e-18 95.1 107 46.7
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 5.9e-18 94.7 107 48.6
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 1.0e-17 94.0 143 39.2
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 1.3e-17 93.6 107 45.8
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 1.7e-17 93.2 107 47.7
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 1.7e-17 93.2 136 41.2
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 2.9e-17 92.4 130 41.5
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 5.0e-17 91.7 143 39.2
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 5.0e-17 91.7 142 40.8
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 8.6e-17 90.9 131 42.7
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 1.1e-16 90.5 142 41.5
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.5e-16 90.1 142 40.1
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 2.5e-16 89.4 138 40.6
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 4.2e-16 88.6 118 44.9
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 4.2e-16 88.6 129 41.9
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 7.2e-16 87.8 118 47.5
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 9.5e-16 87.4 117 44.4
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.2e-15 87.0 118 47.5
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 1.2e-15 87.0 142 39.4
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 1.2e-15 87.0 137 42.3
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 1.6e-15 86.7 107 43.0
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 2.1e-15 86.3 142 38.7
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 2.8e-15 85.9 142 38.7
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 1.4e-14 83.6 118 43.2
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 2.3e-14 82.8 142 38.7
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 4.0e-14 82.0 139 37.4
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 5.2e-14 81.6 99 46.5
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 6.8e-14 81.3 129 40.3
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 6.8e-14 81.3 142 38.0
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 6.8e-14 81.3 139 36.7
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 8.9e-14 80.9 137 41.6
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 9.8e-13 77.4 100 40.0
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 2.2e-12 76.3 92 43.5
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 1.1e-11 73.9 116 42.2
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 3.1e-11 72.4 96 49.0
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 5.9e-10 68.2 89 43.8
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 5.9e-10 68.2 100 37.0
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 5.9e-10 68.2 100 37.0
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 5.0e-09 65.1 101 41.6
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 5.0e-09 65.1 87 41.4
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 1.2e-07 60.5 87 37.9
arahy.Tifrunner.gnm1.ann1.C4VQXX Arachis hypogaea HOM05D001335 ORTHO05D001184 6.1e-07 58.2 100 32.0
arahy.Tifrunner.gnm1.ann1.UI9RNN Arachis hypogaea HOM05D001335 ORTHO05D001184 6.1e-07 58.2 89 34.8
arahy.Tifrunner.gnm1.ann1.Q95WBF Arachis hypogaea HOM05D001335 ORTHO05D001184 1.4e-06 57.0 110 30.9
Dinv33460 Davidia involucrata HOM05D007272 ORTHO05D010159 1.8e-06 56.6 50 50.0
arahy.Tifrunner.gnm1.ann1.MCR2FH Arachis hypogaea HOM05D001335 ORTHO05D001184 2.3e-06 56.2 100 31.0
arahy.Tifrunner.gnm1.ann1.DD99A7 Arachis hypogaea HOM05D001335 ORTHO05D001184 8.9e-06 54.3 100 30.0
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 8.9e-06 54.3 53 45.3


User provided reference genes

Program Settings