Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.2e-239 832.8 429 100.0
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 2.0e-181 639.4 429 74.8
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.3e-180 636.7 429 74.8
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.1e-179 633.6 429 74.8
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.1e-179 632.1 430 74.0
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 6.5e-177 624.4 410 76.8
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 6.5e-177 624.4 426 74.2
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 6.5e-177 624.4 431 74.0
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.1e-175 619.4 429 73.7
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 2.1e-175 619.4 429 73.7
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 3.6e-175 618.6 400 77.5
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 6.1e-175 617.8 426 74.4
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.8e-174 616.3 428 73.1
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.3e-174 615.9 429 73.2
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 3.0e-174 615.5 419 74.9
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 3.9e-174 615.1 419 74.9
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 5.1e-174 614.8 428 73.1
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 6.7e-174 614.4 429 73.9
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 8.8e-174 614.0 429 74.8
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 5.7e-173 611.3 432 73.1
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 7.4e-173 610.9 400 78.2
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 7.4e-173 610.9 364 83.0
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 9.7e-173 610.5 400 77.0
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.3e-172 610.1 429 74.1
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.7e-172 609.8 429 74.4
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 2.8e-172 609.0 429 73.2
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 4.8e-172 608.2 369 80.8
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 4.8e-172 608.2 430 73.3
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 6.3e-172 607.8 401 76.8
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 6.3e-172 607.8 382 80.9
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 8.2e-172 607.4 432 72.0
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 3.1e-171 605.5 410 74.1
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 4.1e-171 605.1 385 79.5
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 5.3e-171 604.7 382 80.6
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 9.1e-171 604.0 446 69.5
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 9.1e-171 604.0 375 81.3
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 9.1e-171 604.0 428 72.9
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 1.2e-170 603.6 431 72.4
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 1.2e-170 603.6 403 78.7
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 2.0e-170 602.8 368 80.4
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.0e-170 602.8 364 82.1
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 2.6e-170 602.4 437 71.9
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.5e-170 602.1 410 73.7
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 4.5e-170 601.7 395 78.7
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 7.7e-170 600.9 429 72.5
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 7.7e-170 600.9 364 79.7
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 1.0e-169 600.5 364 79.7
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.0e-169 600.5 433 72.1
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 1.3e-169 600.1 428 72.0
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 1.3e-169 600.1 428 72.2
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.9e-169 599.0 415 74.7
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.9e-169 599.0 396 75.3
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 3.8e-169 598.6 381 78.5
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 3.8e-169 598.6 425 72.9
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 5.0e-169 598.2 428 72.0
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 5.0e-169 598.2 373 77.2
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 6.5e-169 597.8 364 80.8
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 1.1e-168 597.0 430 72.8
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.1e-168 597.0 410 74.4
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 1.9e-168 596.3 428 71.7
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.9e-168 596.3 426 70.9
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 3.2e-168 595.5 428 72.9
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 9.4e-168 594.0 369 80.8
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.6e-167 593.2 381 76.6
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.6e-167 592.0 407 73.0
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 6.1e-167 591.3 364 81.6
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 6.1e-167 591.3 420 72.9
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 8.0e-167 590.9 426 70.2
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 1.0e-166 590.5 407 74.4
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.4e-166 590.1 364 80.8
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.3e-166 589.3 430 72.1
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 3.0e-166 589.0 365 81.9
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 3.9e-166 588.6 365 81.1
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 6.7e-166 587.8 428 72.2
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 1.1e-165 587.0 430 71.6
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.1e-165 587.0 430 71.2
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 2.0e-165 586.3 429 71.3
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 2.0e-165 586.3 429 71.3
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.0e-165 586.3 380 76.3
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 7.4e-165 584.3 365 81.4
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 1.3e-164 583.6 427 71.4
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.7e-164 583.2 365 81.4
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 2.8e-164 582.4 430 71.2
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 2.8e-164 582.4 368 79.3
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 4.8e-164 581.6 382 77.2
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 8.2e-164 580.9 431 71.2
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 1.1e-163 580.5 453 68.4
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.4e-163 579.3 440 68.6
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 3.1e-163 578.9 327 85.6
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 5.3e-163 578.2 427 70.5
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.2e-162 577.0 338 82.2
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 7.7e-162 574.3 437 69.3
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 7.7e-162 574.3 381 77.2
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 7.7e-162 574.3 381 77.2
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 7.7e-162 574.3 424 71.0
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.0e-161 573.9 380 76.8
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.2e-161 572.8 380 76.6
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.2e-161 572.8 433 70.4
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 6.5e-161 571.2 380 76.6
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 1.9e-160 569.7 418 72.0
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 3.2e-160 568.9 365 79.7
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.7e-159 565.8 313 86.9
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 3.6e-159 565.5 398 72.9
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 1.0e-158 563.9 379 75.5
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 6.7e-158 561.2 365 77.8
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 6.7e-158 561.2 365 77.8
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 7.5e-157 557.8 429 68.8
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 8.2e-156 554.3 374 75.1
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.5e-152 542.7 364 76.1
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 4.7e-151 538.5 389 73.5
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 6.1e-151 538.1 412 65.5
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.5e-149 533.5 424 64.6
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 4.8e-148 528.5 364 75.3
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 4.8e-148 528.5 364 75.3
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 5.0e-145 518.5 374 72.5
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 2.6e-133 479.6 281 82.2
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 9.8e-133 477.6 369 69.6
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 2.0e-130 469.9 335 70.1
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 2.3e-129 466.5 351 72.4
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 5.0e-129 465.3 438 57.8
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.9e-128 463.4 333 70.0
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 3.3e-128 462.6 328 72.9
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 7.3e-128 461.5 334 69.2
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 1.4e-126 457.2 340 67.6
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 1.4e-126 457.2 340 67.6
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 1.4e-126 457.2 340 67.6
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.4e-126 457.2 328 69.5
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 2.3e-126 456.4 333 68.8
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 4.0e-126 455.7 332 69.3
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 2.0e-125 453.4 333 68.8
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 9.8e-125 451.1 333 68.5
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 1.0e-121 441.0 343 64.7
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 1.6e-119 433.7 393 57.3
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.2e-117 427.6 320 70.9
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 4.9e-116 422.2 312 67.9
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 2.7e-114 416.4 396 59.3
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.2e-107 392.9 280 69.6
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 6.6e-105 385.2 326 66.0
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 9.6e-104 381.3 351 61.3
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.6e-103 380.6 223 83.9
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.3e-84 317.8 216 77.8
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.1e-72 278.1 193 74.1
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 5.3e-70 269.2 233 61.4
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 2.6e-69 266.9 201 69.2
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.2e-61 241.5 297 47.5
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.4e-59 234.6 276 48.9
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 2.2e-55 220.7 141 75.2
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 1.1e-51 208.4 161 63.4
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 4.2e-51 206.5 311 41.2
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 2.3e-49 200.7 161 61.5
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-43 181.8 147 65.3
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-42 178.3 100 82.0
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 2.3e-41 174.1 157 55.4
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 8.8e-41 172.2 104 82.7
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-40 171.8 100 79.0
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 7.5e-40 169.1 100 81.0
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 2.8e-39 167.2 151 56.3
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-37 161.8 100 76.0
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 1.3e-36 158.3 150 60.7
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 1.1e-35 155.2 212 40.6
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.5e-35 154.1 77 88.3
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 3.6e-34 150.2 157 51.0
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 3.0e-33 147.1 122 65.6
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.1e-30 137.1 73 80.8
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.4e-25 121.7 135 50.4
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.1e-22 112.1 72 73.6
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 7.3e-19 99.4 106 53.8
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.1e-18 97.8 73 65.8
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 3.5e-13 80.5 160 37.5
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 4.6e-13 80.1 74 58.1
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 1.7e-12 78.2 75 65.3
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 1.7e-12 78.2 75 65.3
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 8.1e-10 69.3 49 67.3
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 6.4e-07 59.7 40 77.5


User provided reference genes

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