Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.2e-178 629.8 332 100.0
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.3e-71 274.2 332 50.0
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 1.1e-67 261.2 313 50.5
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 3.4e-64 249.6 293 51.5
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 9.8e-64 248.1 294 51.7
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 4.1e-62 242.7 334 47.3
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 5.4e-62 242.3 316 49.4
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.0e-60 238.0 324 46.3
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 6.6e-60 235.3 330 47.3
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.6e-60 235.0 325 44.6
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 5.6e-59 232.3 310 44.5
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 7.3e-59 231.9 326 45.4
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 3.6e-58 229.6 346 45.1
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.4e-57 227.6 313 45.4
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.4e-57 227.6 360 44.4
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 1.8e-57 227.3 339 44.0
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.3e-57 226.9 303 45.5
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 4.0e-57 226.1 324 47.2
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 6.8e-57 225.3 327 44.6
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 8.9e-57 224.9 298 48.0
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.5e-56 224.2 312 44.9
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 2.6e-56 223.4 304 44.1
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.6e-56 223.4 330 45.2
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 3.4e-56 223.0 327 44.6
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 4.4e-56 222.6 312 44.6
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 9.8e-56 221.5 331 45.3
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 4.9e-55 219.2 327 42.8
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 4.9e-55 219.2 314 44.3
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.4e-54 217.6 325 42.8
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.9e-54 217.2 280 48.2
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 4.1e-54 216.1 320 43.8
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 5.4e-54 215.7 296 46.3
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.6e-53 214.2 308 42.9
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.0e-53 213.8 314 46.2
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.7e-53 213.4 312 43.9
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.7e-53 213.4 329 43.8
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.9e-52 209.5 325 41.2
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 6.6e-52 208.8 299 44.1
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.9e-51 207.2 296 44.6
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 5.6e-51 205.7 307 44.0
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-50 204.5 312 42.6
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.1e-50 203.8 284 47.5
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 6.2e-50 202.2 296 41.6
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 8.0e-50 201.8 294 44.6
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.8e-49 200.7 300 44.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 3.1e-49 199.9 313 43.1
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 5.2e-49 199.1 313 42.2
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 5.2e-49 199.1 292 45.5
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 6.8e-49 198.7 300 42.0
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.8e-49 198.7 315 43.5
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.2e-48 198.0 307 43.0
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.2e-48 198.0 311 41.5
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.5e-48 197.6 311 41.5
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.6e-48 196.8 300 43.7
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 2.6e-48 196.8 318 43.1
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 2.6e-48 196.8 289 44.6
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.6e-48 196.8 320 42.5
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.4e-48 196.1 308 41.6
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 5.8e-48 195.7 313 41.9
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 5.8e-48 195.7 292 44.9
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 7.5e-48 195.3 320 40.3
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.7e-47 193.0 336 42.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 3.7e-47 193.0 321 40.8
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 6.4e-47 192.2 296 39.5
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 6.4e-47 192.2 309 42.4
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 8.3e-47 191.8 299 41.5
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 8.3e-47 191.8 325 39.4
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.4e-46 191.0 328 39.3
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.9e-46 190.7 322 42.9
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.9e-46 190.7 360 38.1
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.9e-46 190.7 304 41.8
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.2e-46 189.9 315 41.6
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 4.1e-46 189.5 326 39.6
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 4.1e-46 189.5 338 40.5
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.4e-46 189.1 316 40.5
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 5.4e-46 189.1 288 39.9
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 7.0e-46 188.7 293 41.0
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 9.2e-46 188.3 300 40.7
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 9.2e-46 188.3 332 42.2
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 6.0e-45 185.7 309 41.7
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 7.8e-45 185.3 330 38.2
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.7e-44 184.1 300 39.7
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 5.0e-44 182.6 317 39.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 5.0e-44 182.6 281 42.7
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 6.6e-44 182.2 314 39.5
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.1e-43 181.4 318 38.1
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 3.3e-43 179.9 308 38.6
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 5.6e-43 179.1 301 40.5
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 9.5e-43 178.3 306 42.2
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.2e-42 177.9 307 41.7
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.1e-42 177.2 309 40.1
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.1e-42 177.2 293 38.9
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.1e-42 177.2 293 38.9
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 3.6e-42 176.4 309 38.8
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 3.6e-42 176.4 258 46.1
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.4e-41 174.5 337 38.0
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.4e-41 174.5 301 39.2
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 2.3e-41 173.7 316 39.6
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 5.2e-41 172.6 296 38.9
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 2.6e-40 170.2 298 38.3
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 9.9e-40 168.3 334 38.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 9.9e-40 168.3 301 38.2
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.7e-39 167.5 264 42.4
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 2.2e-39 167.2 325 38.8
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.2e-39 167.2 483 31.9
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.9e-39 166.8 315 35.9
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 8.3e-39 165.2 416 33.9
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 8.3e-39 165.2 306 38.9
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.6e-37 161.0 237 45.1
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 4.6e-37 159.5 260 41.2
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.8e-37 158.7 247 41.7
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.7e-36 157.5 297 38.7
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.0e-36 156.8 292 38.4
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 8.6e-36 155.2 293 36.5
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.1e-35 154.8 238 40.8
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.5e-35 154.5 293 38.2
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 4.7e-34 149.4 329 34.0
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.4e-33 147.9 306 33.3
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 5.2e-33 146.0 286 35.0
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.2e-32 144.8 163 53.4
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 9.2e-30 135.2 352 30.4
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 2.1e-29 134.0 240 39.2
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 7.8e-29 132.1 301 32.6
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 6.6e-28 129.0 316 33.2
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 2.1e-26 124.0 317 31.5
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 9.0e-25 118.6 258 34.1
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.1e-22 111.7 305 30.2
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.4e-22 110.5 298 29.9
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 7.1e-22 109.0 197 38.1
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 3.3e-19 100.1 257 33.1
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.3e-19 99.0 157 43.3
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 1.8e-17 94.4 240 31.2
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.5e-16 91.3 95 57.9
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.8e-15 86.7 71 57.7
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 3.0e-12 77.0 70 55.7
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.9e-12 76.6 74 54.1
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 6.7e-12 75.9 314 25.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 7.4e-11 72.4 50 68.0
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 1.8e-09 67.8 363 24.5
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.5e-08 64.7 97 37.1
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.6e-08 63.9 280 27.5
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 9.9e-08 62.0 96 40.6
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.9e-07 59.7 75 46.7
Pp3c17_20470 Physcomitrium patens HOM05D025852 ORTHO05D031190 7.1e-06 55.8 378 20.9


User provided reference genes

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