Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 1.4e-73 279.6 148 100.0
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 1.1e-27 127.1 83 79.5
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 1.2e-26 123.6 106 63.2
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 8.0e-26 120.9 83 74.7
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.1e-25 120.6 102 66.7
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 1.8e-25 119.8 78 80.8
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 1.8e-25 119.8 83 74.7
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 1.8e-25 119.8 77 81.8
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 1.8e-25 119.8 77 81.8
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 3.1e-25 119.0 77 77.9
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 4.0e-25 118.6 107 61.7
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 1.2e-24 117.1 77 77.9
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 1.2e-24 117.1 82 70.7
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 1.5e-24 116.7 102 63.7
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 1.5e-24 116.7 104 62.5
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 2.0e-24 116.3 88 71.6
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 2.0e-24 116.3 90 68.9
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 2.0e-24 116.3 102 62.7
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 2.0e-24 116.3 97 67.0
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 2.6e-24 115.9 102 58.8
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 3.4e-24 115.5 106 59.4
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 5.8e-24 114.8 113 57.5
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 7.5e-24 114.4 102 60.8
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 7.5e-24 114.4 103 62.1
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 7.5e-24 114.4 77 77.9
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.3e-23 113.6 79 75.9
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 2.9e-23 112.5 90 64.4
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 2.9e-23 112.5 82 72.0
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 3.7e-23 112.1 105 59.0
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 3.7e-23 112.1 87 65.5
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 3.7e-23 112.1 87 66.7
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 4.9e-23 111.7 103 60.2
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 4.9e-23 111.7 77 75.3
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 4.9e-23 111.7 102 56.9
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 4.9e-23 111.7 77 76.6
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 4.9e-23 111.7 82 70.7
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 4.9e-23 111.7 121 52.1
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 6.4e-23 111.3 90 64.4
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 6.4e-23 111.3 77 75.3
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 6.4e-23 111.3 87 67.8
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 6.4e-23 111.3 103 56.3
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 6.4e-23 111.3 103 60.2
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 6.4e-23 111.3 83 69.9
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 6.4e-23 111.3 83 69.9
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 8.3e-23 110.9 77 74.0
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 8.3e-23 110.9 83 67.5
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 1.1e-22 110.5 98 65.3
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 1.1e-22 110.5 97 60.8
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 1.1e-22 110.5 80 68.8
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 1.4e-22 110.2 90 66.7
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 1.4e-22 110.2 90 66.7
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 1.4e-22 110.2 90 66.7
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 1.4e-22 110.2 90 66.7
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 1.4e-22 110.2 90 66.7
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 1.4e-22 110.2 101 61.4
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 1.9e-22 109.8 77 74.0
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 1.9e-22 109.8 77 74.0
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 1.9e-22 109.8 104 65.4
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 1.9e-22 109.8 76 75.0
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 1.9e-22 109.8 76 75.0
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 1.9e-22 109.8 90 64.4
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 3.2e-22 109.0 90 65.6
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 3.2e-22 109.0 90 66.7
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 4.1e-22 108.6 110 56.4
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 5.4e-22 108.2 92 60.9
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 5.4e-22 108.2 90 64.4
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 7.0e-22 107.8 77 71.4
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 7.0e-22 107.8 77 71.4
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 7.0e-22 107.8 75 74.7
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 9.2e-22 107.5 77 72.7
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 9.2e-22 107.5 77 72.7
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 9.2e-22 107.5 77 72.7
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 9.2e-22 107.5 77 72.7
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 1.2e-21 107.1 77 71.4
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 1.2e-21 107.1 75 74.7
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 1.2e-21 107.1 77 76.6
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.2e-21 107.1 77 72.7
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 1.2e-21 107.1 77 72.7
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.2e-21 107.1 92 64.1
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 1.2e-21 107.1 92 64.1
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.2e-21 107.1 77 72.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.6e-21 106.7 77 72.7
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 2.1e-21 106.3 76 73.7
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 2.7e-21 105.9 90 64.4
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 2.7e-21 105.9 77 72.7
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 2.7e-21 105.9 100 61.0
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 3.5e-21 105.5 77 71.4
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 3.5e-21 105.5 78 70.5
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 4.6e-21 105.1 77 71.4
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 6.0e-21 104.8 81 66.7
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 7.8e-21 104.4 84 60.7
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 7.8e-21 104.4 77 67.5
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 7.8e-21 104.4 77 70.1
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.0e-20 104.0 75 72.0
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 1.0e-20 104.0 80 68.8
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.0e-20 104.0 88 63.6
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 1.0e-20 104.0 104 59.6
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 1.3e-20 103.6 82 62.2
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.3e-20 103.6 108 55.6
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 1.7e-20 103.2 103 52.4
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.7e-20 103.2 88 63.6
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.7e-20 103.2 88 63.6
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.7e-20 103.2 88 63.6
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.7e-20 103.2 88 63.6
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 1.7e-20 103.2 84 66.7
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 2.3e-20 102.8 75 70.7
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 2.3e-20 102.8 84 66.7
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 2.3e-20 102.8 101 58.4
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 3.0e-20 102.4 106 58.5
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.0e-20 102.4 84 64.3
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.0e-20 102.4 84 64.3
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 3.9e-20 102.1 94 57.4
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 3.9e-20 102.1 75 73.3
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 5.1e-20 101.7 89 59.6
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.6e-20 101.3 87 62.1
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 6.6e-20 101.3 77 64.9
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 1.1e-19 100.5 146 47.9
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-19 100.1 84 64.3
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 3.3e-19 99.0 84 64.3
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 5.6e-19 98.2 76 69.7
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 5.6e-19 98.2 84 61.9
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 3.6e-18 95.5 99 53.5
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 4.7e-18 95.1 91 57.1
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 6.2e-18 94.7 99 53.5
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 1.4e-17 93.6 83 61.4
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 2.3e-17 92.8 91 56.0
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 3.1e-17 92.4 145 43.4
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 5.2e-17 91.7 77 64.9
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 2.6e-16 89.4 77 64.9
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 3.4e-16 89.0 91 54.9
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 9.9e-16 87.4 77 62.3
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.9e-14 83.2 80 57.5
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.9e-14 83.2 83 55.4
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 4.1e-14 82.0 122 49.2
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 4.1e-14 82.0 79 64.6
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 5.2e-09 65.1 82 51.2
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 8.9e-09 64.3 60 61.7
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 2.6e-08 62.8 57 61.4
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 2.9e-07 59.3 50 62.0


User provided reference genes

Program Settings