Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 9.1e-139 496.9 249 100.0
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.6e-119 433.0 249 81.9
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.0e-118 430.3 249 80.7
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 1.4e-118 429.9 247 81.4
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.3e-118 429.1 249 81.9
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.5e-117 426.4 247 81.0
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.5e-117 426.4 247 81.0
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 2.0e-117 426.0 247 81.0
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 7.5e-117 424.1 248 81.5
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 4.8e-116 421.4 249 80.7
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 8.3e-116 420.6 247 78.1
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.1e-115 420.2 248 80.6
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.1e-115 420.2 248 80.6
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 1.1e-115 420.2 249 80.7
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.8e-115 419.5 248 81.0
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 3.1e-115 418.7 249 81.5
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 3.1e-115 418.7 249 81.5
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 3.1e-115 418.7 248 81.5
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 3.1e-115 418.7 248 80.2
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.0e-115 417.5 247 77.3
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 9.1e-115 417.2 259 76.8
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.6e-114 416.4 250 81.6
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 2.0e-114 416.0 254 79.5
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 7.7e-114 414.1 248 79.8
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 1.7e-113 412.9 249 77.5
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 2.3e-113 412.5 249 79.5
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 2.9e-113 412.1 249 79.1
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 5.0e-113 411.4 249 79.1
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 8.6e-113 410.6 248 78.6
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 8.6e-113 410.6 249 78.7
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.9e-112 409.5 249 79.5
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 3.2e-112 408.7 248 80.2
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 4.2e-112 408.3 251 77.7
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 4.2e-112 408.3 248 77.4
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 7.2e-112 407.5 248 79.0
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 9.5e-112 407.1 249 78.7
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 9.5e-112 407.1 248 79.4
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 1.2e-111 406.8 249 78.7
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 1.6e-111 406.4 248 79.0
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 2.1e-111 406.0 248 79.0
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.8e-111 405.6 250 79.6
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 2.8e-111 405.6 248 78.2
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 2.8e-111 405.6 249 78.7
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 6.1e-111 404.4 249 77.1
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 6.1e-111 404.4 248 78.2
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 8.0e-111 404.1 248 77.0
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 8.0e-111 404.1 248 77.4
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 1.4e-110 403.3 248 79.0
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 2.3e-110 402.5 248 76.6
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 3.0e-110 402.1 248 76.6
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 4.0e-110 401.7 248 76.6
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 4.0e-110 401.7 275 72.0
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 5.2e-110 401.4 274 70.4
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 6.8e-110 401.0 250 76.4
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 6.8e-110 401.0 250 76.4
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 8.8e-110 400.6 248 76.6
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.2e-109 400.2 248 77.0
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 2.6e-109 399.1 248 77.4
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 2.6e-109 399.1 248 77.8
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 2.6e-109 399.1 249 78.7
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 3.4e-109 398.7 247 76.5
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 4.4e-109 398.3 248 76.6
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 5.7e-109 397.9 248 76.2
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 9.8e-109 397.1 248 76.2
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.3e-108 396.7 247 76.1
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 1.7e-108 396.4 251 76.1
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 2.2e-108 396.0 247 76.5
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 2.8e-108 395.6 253 76.3
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 3.7e-108 395.2 252 76.6
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.9e-108 394.8 270 72.6
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 4.9e-108 394.8 253 75.9
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 8.3e-108 394.0 247 76.1
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 2.4e-107 392.5 251 75.3
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 3.1e-107 392.1 289 68.2
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 5.4e-107 391.3 251 74.5
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 5.4e-107 391.3 252 75.4
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 9.2e-107 390.6 247 74.9
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 2.0e-106 389.4 250 74.4
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 5.9e-106 387.9 233 77.7
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.0e-105 387.1 254 74.0
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 5.6e-104 381.3 248 76.6
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 4.0e-102 375.2 251 74.9
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 5.2e-102 374.8 231 77.5
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 5.2e-102 374.8 231 77.5
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 6.8e-102 374.4 221 78.7
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 1.2e-101 373.6 251 74.5
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 2.6e-101 372.5 221 78.3
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 3.7e-100 368.6 249 71.5
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 6.4e-100 367.9 241 74.7
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 1.4e-99 366.7 248 71.8
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 4.6e-98 361.7 254 70.5
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 3.3e-96 355.5 220 78.6
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.8e-95 352.4 249 68.7
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 8.0e-95 350.9 251 67.3
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 4.0e-94 348.6 248 71.0
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 5.2e-94 348.2 219 77.6
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 1.2e-93 347.1 208 81.2
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 4.9e-92 341.7 235 70.2
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.9e-92 341.7 249 69.1
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 3.2e-91 339.0 250 66.4
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 7.0e-91 337.8 250 68.0
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 9.2e-91 337.4 250 70.8
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 7.8e-90 334.3 448 43.8
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.7e-89 333.2 236 70.3
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 8.6e-89 330.9 278 64.4
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 1.9e-88 329.7 237 69.2
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.8e-87 325.9 242 65.7
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 8.1e-87 324.3 252 67.1
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.3e-81 307.0 247 62.8
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 2.3e-81 306.2 249 59.4
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 3.0e-81 305.8 189 77.2
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 4.3e-80 302.0 248 62.9
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.6e-79 300.1 194 72.7
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.1e-79 299.7 268 60.4
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.4e-75 286.2 277 55.6
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 1.3e-73 280.4 334 50.3
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.2e-71 273.9 210 67.1
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.1e-70 270.8 227 56.4
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 1.1e-70 270.8 201 68.2
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.5e-69 266.9 207 64.7
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 3.4e-69 265.8 247 57.9
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 4.2e-67 258.8 228 53.1
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 5.4e-67 258.5 156 77.6
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 3.9e-65 252.3 156 76.9
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 4.3e-64 248.8 238 52.9
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 5.8e-61 238.4 170 69.4
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 6.4e-60 235.0 282 50.0
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 3.2e-59 232.6 145 73.1
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.1e-55 219.9 140 75.7
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 3.1e-54 216.1 206 57.3
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 2.9e-52 209.5 156 66.0
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 9.6e-48 194.5 114 82.5
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 6.7e-41 171.8 114 74.6
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 2.0e-37 160.2 91 81.3
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 1.9e-35 153.7 128 62.5
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 7.2e-35 151.8 96 72.9
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 7.4e-32 141.7 174 48.3
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-28 128.3 94 67.0
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 7.2e-27 125.2 247 36.4
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.2e-15 87.0 51 72.5


User provided reference genes

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