Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 8.3e-199 696.8 345 100.0
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 6.4e-175 617.5 345 88.7
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 6.5e-127 458.0 342 66.1
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 1.2e-125 453.8 344 62.8
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 9.7e-123 444.1 343 63.6
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 2.8e-122 442.6 341 63.3
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 3.7e-122 442.2 341 63.6
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 8.2e-122 441.0 342 64.3
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 8.2e-122 441.0 337 65.0
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 8.2e-122 441.0 341 63.0
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 5.3e-121 438.3 346 63.9
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 6.9e-121 438.0 347 63.4
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 9.1e-121 437.6 348 64.9
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 2.0e-120 436.4 346 62.7
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 2.2e-119 433.0 341 62.2
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 1.2e-117 427.2 342 63.2
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 4.6e-117 425.2 347 60.8
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 2.3e-116 422.9 342 62.3
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 2.3e-116 422.9 340 61.8
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 2.6e-115 419.5 341 61.6
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 2.6e-115 419.5 350 58.9
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 5.7e-115 418.3 344 59.3
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 9.7e-115 417.5 343 61.2
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 2.8e-114 416.0 343 59.2
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 2.8e-114 416.0 330 62.1
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 3.7e-114 415.6 348 59.2
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 4.8e-114 415.2 341 60.1
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 6.3e-114 414.8 350 58.3
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 8.2e-114 414.5 348 59.5
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 2.4e-113 412.9 349 60.7
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 3.1e-113 412.5 336 61.6
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 3.1e-113 412.5 336 60.4
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 4.1e-113 412.1 348 60.3
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 5.3e-113 411.8 340 60.9
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 9.1e-113 411.0 344 57.0
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 1.2e-112 410.6 343 59.5
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 1.2e-112 410.6 349 58.2
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 1.5e-112 410.2 343 60.1
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 3.4e-112 409.1 344 60.8
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 3.4e-112 409.1 347 60.5
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 4.5e-112 408.7 355 58.3
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 7.7e-112 407.9 349 59.6
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 2.2e-111 406.4 336 60.4
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 2.2e-111 406.4 347 59.4
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 2.2e-111 406.4 354 57.9
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 2.2e-111 406.4 343 59.2
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 5.0e-111 405.2 335 60.9
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 5.0e-111 405.2 348 58.0
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 6.5e-111 404.8 336 60.4
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 2.5e-110 402.9 340 59.4
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 2.5e-110 402.9 337 59.3
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 3.2e-110 402.5 339 60.8
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 4.2e-110 402.1 341 58.9
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 1.2e-109 400.6 336 58.9
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.2e-109 400.6 335 57.9
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 1.6e-109 400.2 339 58.4
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 2.7e-109 399.4 334 59.0
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 3.6e-109 399.1 337 59.1
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 3.6e-109 399.1 340 57.9
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 1.0e-108 397.5 347 57.9
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 2.3e-108 396.4 354 57.9
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 3.0e-108 396.0 347 56.5
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 3.9e-108 395.6 343 56.9
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 6.7e-108 394.8 347 57.6
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.5e-107 393.7 343 56.6
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 2.0e-107 393.3 342 58.2
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 9.7e-107 391.0 346 57.8
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 9.7e-107 391.0 335 58.5
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 2.8e-106 389.4 344 57.0
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 4.8e-106 388.7 352 57.7
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 2.5e-102 376.3 308 59.1
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.2e-101 374.0 271 64.6
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 8.2e-98 361.3 346 54.9
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 1.7e-95 353.6 346 52.9
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 6.8e-92 341.7 354 49.7
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.7e-87 327.0 362 48.9
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 2.9e-87 326.2 340 48.5
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.1e-81 307.8 334 47.6
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.7e-79 300.4 372 42.5
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 5.0e-79 298.9 359 44.6
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 6.6e-79 298.5 337 46.0
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 6.8e-76 288.5 377 40.6
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 5.4e-73 278.9 264 56.1
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.5e-72 276.2 382 40.8
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 9.2e-65 251.5 149 75.8
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 8.1e-61 238.4 235 56.2
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 2.0e-59 233.8 165 61.8
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 5.8e-59 232.3 142 72.5
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 1.7e-58 230.7 142 71.8
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 4.9e-58 229.2 234 51.7
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 3.9e-55 219.5 146 66.4
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 4.1e-49 199.5 220 50.9
Peaxi162Scf00188g00923 Petunia axillaris HOM05D006847 ORTHO05D008685 2.5e-46 190.3 201 52.2
SEGI_24845 Sequoiadendron giganteum HOM05D006847 ORTHO05D008685 2.4e-44 183.7 199 51.8
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 5.8e-43 179.1 267 40.1
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.5e-35 154.5 144 50.0
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 2.9e-34 150.2 87 74.7
CSS0029748 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 1.0e-31 141.7 161 55.9
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 1.8e-31 141.0 110 56.4
Psat2g097480 Pisum sativum HOM05D006847 ORTHO05D008685 5.8e-27 125.9 189 42.9
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 2.4e-20 104.0 148 37.2
Nn4g23574 Nelumbo nucifera HOM05D006847 ORTHO05D008685 1.8e-15 87.8 61 70.5
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 1.5e-14 84.7 56 60.7
Solyc05g010640.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 1.5e-14 84.7 138 40.6
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 1.9e-14 84.3 144 35.4
AagrBONN_evm.TU.Sc2ySwM_117.3730 Anthoceros agrestis HOM05D006847 ORTHO05D008685 9.7e-14 82.0 192 28.1
CAN.G992.5 Capsicum annuum HOM05D006847 ORTHO05D008685 2.0e-11 74.3 63 60.3
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 4.5e-11 73.2 215 27.9
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 7.6e-11 72.4 162 30.2
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 1.3e-10 71.6 175 29.1
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 1.7e-10 71.2 168 27.4
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 1.7e-10 71.2 168 28.0
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 2.2e-10 70.9 168 29.2
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 2.9e-10 70.5 179 27.4
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 3.8e-10 70.1 179 27.9
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 5.0e-10 69.7 179 26.8
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 8.5e-10 68.9 160 27.5
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.1e-09 68.6 168 26.2
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 1.4e-09 68.2 160 28.8
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 1.4e-09 68.2 179 27.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 2.5e-09 67.4 168 28.0
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 2.5e-09 67.4 162 27.2
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 7.2e-09 65.9 160 26.9
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 7.2e-09 65.9 162 29.0
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 1.2e-08 65.1 158 27.2
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 3.6e-08 63.5 168 24.4
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 4.6e-08 63.2 170 27.1
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 1.4e-07 61.6 167 26.3
CSS0043445 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D000152 3.9e-07 60.1 70 47.1
Pp3c6_26630 Physcomitrium patens HOM05D016606 ORTHO05D018318 5.1e-07 59.7 170 26.5
CBR_g22374 Chara braunii HOM05D016606 ORTHO05D018318 8.8e-07 58.9 149 25.5
Pp3c13_12040 Physcomitrium patens HOM05D016606 ORTHO05D018318 8.8e-07 58.9 159 28.3
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 1.9e-06 57.8 169 24.3
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 1.9e-06 57.8 218 22.5


User provided reference genes

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