Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 0.0e+00 1936.4 930 100.0
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 0.0e+00 1363.6 755 87.8
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.4e-279 964.9 506 92.9
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-251 873.2 442 94.8
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-217 760.8 441 84.1
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.9e-207 725.3 422 85.1
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.7e-207 724.9 380 92.9
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-174 617.5 334 90.7
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 3.5e-151 540.0 978 37.1
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.6e-127 459.9 227 94.3
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 9.9e-122 442.2 955 34.7
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.8e-119 432.6 223 93.3
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.3e-118 431.8 962 33.6
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 9.6e-117 425.6 964 32.7
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.8e-115 421.4 852 35.4
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.5e-114 418.3 954 31.9
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 2.9e-113 414.1 958 33.7
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 3.2e-112 410.6 961 33.3
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 2.3e-110 404.4 948 33.0
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 2.3e-110 404.4 954 32.8
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.1e-110 403.3 955 32.4
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 4.3e-109 400.2 970 31.4
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.6e-108 398.3 967 32.2
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.1e-107 395.6 955 32.3
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 3.1e-107 394.0 957 32.2
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 4.0e-107 393.7 957 32.2
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 5.3e-107 393.3 963 32.3
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.4e-106 390.6 964 32.5
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 7.6e-106 389.4 963 31.5
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 6.5e-105 386.3 962 31.7
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 2.5e-104 384.4 965 31.9
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 5.5e-104 383.3 964 31.4
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.2e-103 382.1 954 32.5
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 4.6e-103 380.2 958 31.8
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.8e-102 378.3 968 30.8
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.8e-102 378.3 967 30.5
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.3e-102 377.9 957 31.2
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 5.1e-102 376.7 994 32.0
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 5.1e-102 376.7 969 31.2
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 5.1e-102 376.7 957 30.4
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.5e-101 374.4 952 31.8
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 4.3e-101 373.6 937 31.6
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.3e-100 372.1 975 30.8
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.6e-100 371.7 831 34.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 6.2e-100 369.8 975 31.5
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 3.1e-99 367.5 967 31.6
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.5e-98 363.6 193 91.7
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.0e-97 362.5 950 32.2
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.7e-97 361.7 965 31.9
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.7e-97 361.7 965 32.1
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 2.9e-97 360.9 966 31.3
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 8.4e-97 359.4 957 30.4
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 2.5e-96 357.8 956 31.3
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 4.2e-96 357.1 959 31.5
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 9.3e-96 355.9 848 32.2
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 1.6e-95 355.1 988 31.6
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 1.6e-95 355.1 948 31.4
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.7e-95 354.4 956 30.6
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.8e-94 351.7 952 29.7
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 3.9e-94 350.5 974 30.6
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 6.7e-94 349.7 757 33.4
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 7.4e-93 346.3 937 30.5
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 9.7e-93 345.9 778 33.4
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.7e-92 344.0 966 29.6
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 4.8e-92 343.6 972 31.1
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.1e-91 342.4 958 30.2
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.4e-91 342.0 998 30.6
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.8e-91 341.7 838 32.2
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 3.1e-91 340.9 968 30.2
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 4.1e-91 340.5 748 34.0
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 6.9e-91 339.7 962 29.0
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.0e-89 335.9 951 29.9
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 5.5e-88 330.1 989 30.2
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 7.2e-88 329.7 854 31.9
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.2e-87 328.9 973 29.8
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.2e-87 328.9 955 29.9
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 4.6e-87 327.0 984 29.9
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 3.0e-86 324.3 803 30.1
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.1e-85 322.4 957 29.9
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 7.4e-85 319.7 926 28.8
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 9.7e-85 319.3 971 29.5
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.1e-83 315.8 963 30.6
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 5.3e-83 313.5 958 28.5
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.5e-82 312.0 423 41.1
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 4.5e-82 310.5 996 28.3
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.9e-82 310.1 967 30.0
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.9e-81 307.8 945 29.5
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 3.8e-81 307.4 962 29.3
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 6.5e-81 306.6 962 27.1
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 8.5e-81 306.2 967 29.2
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.5e-80 304.7 678 33.6
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.5e-74 285.4 475 37.7
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.6e-74 284.6 955 28.2
ATR1192G002 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-73 282.3 147 92.5
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 5.7e-69 266.9 971 26.9
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 9.7e-69 266.2 947 26.8
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 2.2e-68 265.0 583 32.6
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 7.7e-66 256.5 981 28.0
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.0e-65 256.1 860 27.9
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 5.0e-65 253.8 967 26.7
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.5e-64 251.5 848 29.0
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 4.7e-63 247.3 841 28.4
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 8.0e-63 246.5 642 30.8
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.4e-62 245.7 776 29.5
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 2.3e-62 245.0 834 27.7
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 2.3e-62 245.0 836 28.3
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 8.8e-62 243.0 767 28.9
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 2.0e-61 241.9 556 32.9
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 4.4e-61 240.7 498 32.7
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 7.5e-61 240.0 846 27.1
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 1.7e-60 238.8 838 27.7
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 8.3e-60 236.5 534 31.6
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 5.4e-59 233.8 841 25.9
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 4.5e-58 230.7 843 27.3
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.7e-57 228.8 799 27.2
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.1e-56 226.1 855 26.5
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 1.6e-50 205.7 540 30.6
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 8.3e-44 183.3 356 34.0
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.6e-42 179.1 603 28.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.3e-41 176.0 569 29.3
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.1e-40 172.9 694 25.8
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 9.5e-40 169.9 522 27.8
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 6.2e-39 167.2 480 27.7
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.6e-34 152.5 463 30.7
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 3.5e-34 151.4 478 24.7
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.0e-33 149.8 484 28.7
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 1.8e-30 139.0 1048 21.7
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.5e-29 136.0 501 23.8
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.9e-27 129.0 919 22.6
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 2.4e-27 128.6 204 39.7
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 4.1e-27 127.9 187 38.5
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 9.2e-27 126.7 512 24.6
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 4.4e-21 107.8 429 26.8
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 1.7e-20 105.9 359 26.7
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.7e-20 104.8 162 37.7
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 8.4e-20 103.6 368 29.1
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.1e-19 103.2 162 37.0
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 4.6e-18 97.8 196 32.1
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 7.3e-16 90.5 441 27.0
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 2.6e-13 82.0 94 44.7
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 9.9e-13 80.1 218 25.2
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 9.9e-13 80.1 218 25.2
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 2.4e-06 58.9 83 33.7
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.3e-06 57.8 77 37.7


User provided reference genes

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