Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 0.0e+00 1126.7 582 100.0
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 5.8e-245 850.9 538 82.9
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.8e-245 850.9 592 78.0
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 3.7e-244 848.2 590 76.4
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 6.4e-244 847.4 575 77.6
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 7.1e-243 844.0 528 83.0
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.7e-241 839.3 556 78.6
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 5.1e-241 837.8 523 84.1
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 9.6e-240 833.6 548 79.9
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.6e-239 831.6 545 80.7
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 4.7e-239 831.2 499 85.2
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.1e-238 830.1 505 84.6
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 1.4e-238 829.7 556 78.4
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 1.8e-238 829.3 498 85.3
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.2e-237 826.6 521 82.0
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.2e-237 826.6 521 82.0
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.5e-237 826.2 504 84.9
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 3.4e-237 825.1 540 80.4
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 4.4e-237 824.7 492 85.0
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 7.6e-237 823.9 548 79.4
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 9.9e-237 823.5 498 84.7
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 2.2e-236 822.4 505 83.4
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 4.9e-236 821.2 586 75.4
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 8.4e-236 820.5 505 83.0
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 8.4e-236 820.5 509 82.5
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.4e-235 819.7 599 73.6
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 3.2e-235 818.5 585 74.5
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.2e-235 818.5 537 79.7
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 3.2e-235 818.5 500 83.2
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 5.4e-235 817.8 504 82.9
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 7.1e-235 817.4 504 82.9
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.2e-234 816.6 520 80.6
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.6e-234 816.2 561 76.6
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.6e-234 816.2 491 85.3
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.1e-234 815.8 582 74.7
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.7e-234 815.5 583 73.9
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 3.5e-234 815.1 557 76.8
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 3.5e-234 815.1 532 79.5
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 3.5e-234 815.1 500 82.8
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 4.6e-234 814.7 561 76.6
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.6e-234 814.7 588 74.5
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 4.6e-234 814.7 505 82.6
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 4.6e-234 814.7 516 81.8
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 6.0e-234 814.3 557 76.8
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.3e-233 813.1 498 84.1
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.7e-233 812.8 524 80.2
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.7e-233 812.8 532 78.4
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.3e-233 812.4 519 80.9
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 5.1e-233 811.2 555 77.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 5.1e-233 811.2 491 84.3
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 6.6e-233 810.8 591 73.3
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 8.7e-233 810.4 498 83.3
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 8.7e-233 810.4 529 79.0
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.1e-232 810.1 498 83.3
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 3.3e-232 808.5 505 81.4
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 4.3e-232 808.1 594 72.1
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 5.6e-232 807.7 554 75.8
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 7.3e-232 807.4 498 83.7
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.6e-231 806.2 505 82.0
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 2.1e-231 805.8 498 83.3
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 2.8e-231 805.4 539 78.5
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.8e-231 805.4 535 77.9
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.8e-231 805.4 510 81.4
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 4.8e-231 804.7 520 81.2
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 6.2e-231 804.3 596 73.0
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.1e-230 803.5 531 78.2
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.4e-230 802.4 606 72.8
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 5.3e-230 801.2 521 79.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 5.3e-230 801.2 510 81.4
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 6.9e-230 800.8 592 73.0
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 6.9e-230 800.8 513 80.9
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 6.9e-230 800.8 530 78.5
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-229 800.0 584 72.9
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-229 800.0 588 73.1
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.5e-229 799.7 498 81.3
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.5e-229 799.7 494 83.0
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 2.0e-229 799.3 588 72.8
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.0e-229 799.3 508 81.3
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 2.6e-229 798.9 589 72.8
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 3.4e-229 798.5 588 72.8
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.4e-229 798.5 524 79.8
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 4.5e-229 798.1 509 80.2
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 7.6e-229 797.3 502 81.9
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.6e-229 797.3 502 82.5
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.3e-228 796.6 536 77.4
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 2.2e-228 795.8 526 79.3
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 6.4e-228 794.3 527 78.4
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.1e-227 793.5 503 80.7
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 3.5e-226 788.5 527 78.0
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.3e-225 785.8 493 83.2
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.9e-224 782.7 494 81.6
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.3e-223 780.0 544 74.6
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-222 776.9 507 79.5
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.0e-222 775.0 529 76.9
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.2e-221 773.5 494 81.6
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 3.8e-220 768.5 557 75.0
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.8e-220 768.5 487 81.1
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 8.4e-220 767.3 488 81.8
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 7.1e-219 764.2 493 81.3
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.9e-216 756.1 493 80.3
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.6e-215 753.1 467 82.0
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 2.0e-213 746.1 435 88.0
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.3e-209 733.4 466 79.6
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 9.6e-208 727.2 496 75.4
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.1e-206 723.8 501 74.9
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 4.1e-206 721.8 504 76.0
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 5.9e-205 718.0 437 84.0
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.2e-202 710.3 437 83.1
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.9e-200 703.0 485 73.4
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.1e-198 697.2 709 58.1
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.1e-198 695.7 516 70.2
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.7e-196 689.9 436 82.1
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.0e-193 680.6 503 72.2
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.7e-191 673.3 535 67.9
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.8e-185 653.3 396 85.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 4.4e-184 648.7 439 77.0
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 7.4e-184 647.9 409 81.2
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 1.6e-181 640.2 397 81.9
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.6e-178 630.2 442 75.6
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 4.7e-178 628.6 438 74.2
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.2e-176 624.0 427 75.2
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.5e-176 623.6 389 83.0
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.2e-175 619.8 419 75.9
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.0e-173 613.2 421 74.3
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.8e-169 600.1 407 76.9
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.6e-160 569.7 468 67.1
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.1e-158 564.3 596 58.2
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 2.7e-157 559.7 561 57.9
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.1e-146 523.5 316 84.5
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 5.8e-144 515.4 444 65.5
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.2e-138 497.7 356 74.2
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.1e-131 474.6 299 80.3
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 3.3e-131 473.0 351 69.5
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.4e-129 466.8 399 65.7
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 1.1e-121 441.4 269 83.6
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 4.0e-121 439.5 530 47.9
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 4.9e-119 432.6 270 82.6
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-118 431.4 284 78.2
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.4e-118 431.0 261 83.9
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.2e-86 323.2 481 44.9
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.8e-81 307.8 213 74.2
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 8.2e-74 282.3 185 77.3
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 5.0e-71 273.1 239 63.6
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.9e-70 271.2 545 38.2
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 5.3e-65 253.1 170 77.1
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 2.7e-56 224.2 139 81.3
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.9e-56 223.0 155 74.2
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.9e-54 218.0 193 60.1
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.4e-49 201.8 119 85.7
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 1.3e-42 178.7 126 73.0
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.4e-35 154.1 102 77.5
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.9e-34 151.0 94 76.6
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 6.4e-34 149.8 102 75.5
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.2e-32 145.6 113 72.6
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 6.2e-29 133.3 101 75.2
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 5.2e-28 130.2 103 68.0
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 7.5e-27 126.3 69 91.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 4.9e-26 123.6 78 83.3
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 9.2e-25 119.4 97 62.9
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 2.5e-22 111.3 79 70.9
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.0e-19 101.7 61 82.0
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 4.9e-18 97.1 70 71.4
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 2.7e-16 91.3 53 88.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 4.0e-12 77.4 141 36.9
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 2.0e-11 75.1 58 65.5
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.3e-10 72.4 45 75.6
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 3.5e-08 64.3 110 44.5
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 5.1e-07 60.5 39 82.1
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 7.3e-06 56.6 49 57.1
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 9.6e-06 56.2 49 57.1


User provided reference genes

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