Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0691G029 Amborella trichopoda HOM05D003636 ORTHO05D026550 1.4e-111 406.4 213 100.0
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 1.8e-82 309.7 255 70.2
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 8.0e-43 177.9 264 44.3
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 8.3e-40 167.9 260 42.3
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 4.1e-39 165.6 256 44.9
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 1.2e-38 164.1 263 42.6
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 1.6e-38 163.7 263 42.2
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 1.7e-37 160.2 272 39.7
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 2.2e-37 159.8 261 41.8
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 6.5e-37 158.3 275 41.5
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 8.5e-37 157.9 249 43.0
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 1.1e-36 157.5 264 41.7
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 1.1e-36 157.5 256 42.6
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 3.2e-36 156.0 252 42.9
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 4.2e-36 155.6 256 41.8
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 5.5e-36 155.2 258 41.5
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 5.5e-36 155.2 261 42.1
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 5.5e-36 155.2 263 41.4
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 1.2e-35 154.1 261 39.8
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 4.7e-35 152.1 254 40.9
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 8.0e-35 151.4 261 40.6
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 1.4e-34 150.6 257 39.7
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 1.4e-34 150.6 248 42.3
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.8e-34 150.2 258 40.7
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 1.8e-34 150.2 260 39.6
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 1.8e-34 150.2 261 40.2
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 2.3e-34 149.8 246 40.7
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 3.0e-34 149.4 255 40.8
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 4.0e-34 149.1 265 38.9
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 5.2e-34 148.7 250 42.8
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 6.8e-34 148.3 258 39.5
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 8.8e-34 147.9 258 40.7
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.2e-33 147.5 256 39.5
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 1.2e-33 147.5 259 39.8
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 1.2e-33 147.5 258 41.5
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 1.2e-33 147.5 258 41.5
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 1.5e-33 147.1 259 39.4
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.5e-33 147.1 264 40.2
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.6e-33 146.4 250 40.0
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 2.6e-33 146.4 256 39.5
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 2.6e-33 146.4 260 39.2
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 3.4e-33 146.0 261 39.8
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 3.4e-33 146.0 259 39.4
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 5.7e-33 145.2 256 42.2
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 7.5e-33 144.8 265 38.1
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 9.8e-33 144.4 258 40.7
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 1.3e-32 144.1 260 38.5
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 1.3e-32 144.1 260 39.2
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 2.2e-32 143.3 254 39.0
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 4.9e-32 142.1 254 40.6
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 6.3e-32 141.7 242 40.5
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 6.3e-32 141.7 248 40.7
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 8.3e-32 141.4 254 40.9
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 8.3e-32 141.4 259 39.4
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 1.1e-31 141.0 257 40.1
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 1.8e-31 140.2 254 39.0
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 1.8e-31 140.2 255 39.6
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 1.8e-31 140.2 260 39.6
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 2.4e-31 139.8 260 40.8
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 2.4e-31 139.8 256 40.2
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 4.1e-31 139.0 253 39.5
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 4.1e-31 139.0 257 39.7
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 7.0e-31 138.3 258 38.4
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 9.2e-31 137.9 261 39.1
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 1.2e-30 137.5 256 38.3
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 1.2e-30 137.5 259 37.5
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 2.0e-30 136.7 261 38.3
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 2.0e-30 136.7 261 37.2
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 2.7e-30 136.3 260 37.7
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 3.5e-30 136.0 257 40.5
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 3.5e-30 136.0 257 37.0
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 5.9e-30 135.2 261 37.9
TAR633G2776 Trochodendron aralioides HOM05D003636 ORTHO05D013299 5.9e-30 135.2 114 63.2
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 7.7e-30 134.8 260 37.7
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 7.7e-30 134.8 257 38.9
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 1.0e-29 134.4 256 38.7
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 2.3e-29 133.3 262 38.5
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 3.8e-29 132.5 267 36.3
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 1.1e-28 131.0 270 35.6
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.9e-28 130.2 252 37.7
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.9e-28 130.2 252 38.1
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 1.9e-28 130.2 244 41.0
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 3.3e-28 129.4 263 35.7
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 4.3e-28 129.0 240 39.6
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 9.5e-28 127.9 259 35.9
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 2.1e-27 126.7 260 36.2
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 2.1e-27 126.7 260 36.9
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 2.8e-27 126.3 260 35.8
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 4.7e-27 125.6 255 37.6
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 6.1e-27 125.2 259 37.8
unitig_736.g22445 Utricularia gibba HOM05D003636 ORTHO05D013299 6.1e-27 125.2 138 52.9
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 1.8e-26 123.6 259 33.6
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 2.3e-26 123.2 261 35.2
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 3.0e-26 122.9 258 36.4
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 6.8e-26 121.7 246 36.6
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.8e-26 121.7 249 37.3
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 1.5e-25 120.6 262 34.7
Psat2g188720 Pisum sativum HOM05D003636 ORTHO05D005160 1.5e-25 120.6 246 37.4
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 2.0e-25 120.2 294 34.0
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 4.4e-25 119.0 247 35.6
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 4.4e-25 119.0 259 35.9
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 9.8e-25 117.9 281 35.9
ATR0753G084 Amborella trichopoda HOM05D003636 ORTHO05D026550 1.3e-24 117.5 94 68.1
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 1.3e-24 117.5 247 35.6
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 1.7e-24 117.1 262 33.2
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 2.2e-24 116.7 258 36.0
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 6.4e-24 115.2 258 36.4
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 8.3e-24 114.8 248 35.9
HPP92_018389 Vanilla planifolia HOM05D003636 ORTHO05D013299 2.4e-23 113.2 105 59.0
AUR62025056 Chenopodium quinoa HOM05D003636 ORTHO05D013299 2.0e-22 110.2 103 55.3
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 2.0e-22 110.2 104 60.6
AUR62031665 Chenopodium quinoa HOM05D003636 ORTHO05D013299 5.9e-22 108.6 103 54.4
AUR62032924 Chenopodium quinoa HOM05D003636 ORTHO05D013299 3.0e-21 106.3 103 54.4
Duzib138G1962 Durio zibethinus HOM05D003636 ORTHO05D005160 6.2e-19 98.6 115 50.4
ATR0681G056 Amborella trichopoda HOM05D003636 ORTHO05D026550 8.0e-19 98.2 74 73.0
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 8.9e-18 94.7 103 51.5
RhsimUnG0026900 Rhododendron simsii HOM05D003636 ORTHO05D013299 7.5e-17 91.7 85 61.2
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 4.9e-16 89.0 180 35.0
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 3.2e-15 86.3 100 53.0
VMungo0331G1464 Vigna mungo HOM05D003636 ORTHO05D013299 3.5e-14 82.8 112 46.4
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 7.8e-14 81.6 100 49.0
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 1.0e-13 81.3 184 37.5
Rhsim03G0241700 Rhododendron simsii HOM05D003636 ORTHO05D013299 1.2e-11 74.3 154 38.3
RhsimUnG0174100 Rhododendron simsii HOM05D003636 ORTHO05D013299 8.1e-11 71.6 50 72.0
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 4.0e-10 69.3 60 63.3
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 4.0e-10 69.3 66 54.5
TAR633G1121 Trochodendron aralioides HOM05D003636 ORTHO05D026550 5.2e-10 68.9 98 45.9
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 1.3e-08 64.3 108 40.7
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 2.4e-07 60.1 182 31.3
MELO3C029178.2 Cucumis melo HOM05D003636 ORTHO05D005160 1.6e-06 57.4 196 27.6
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 1.6e-06 57.4 98 37.8


User provided reference genes

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