Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 0.0e+00 1290.4 834 100.0
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 3.2e-95 354.0 835 32.5
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 8.1e-91 339.3 834 32.0
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 5.3e-90 336.7 800 32.1
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 3.3e-84 317.4 856 29.3
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.3e-83 315.5 839 31.7
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.0e-82 310.5 860 30.2
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 9.9e-81 305.8 836 29.7
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 9.9e-81 305.8 859 29.2
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 8.4e-80 302.8 831 29.1
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 7.9e-78 296.2 329 50.2
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.0e-77 295.8 830 30.0
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.3e-77 295.4 863 29.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 6.7e-77 293.1 843 28.5
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 8.1e-75 286.2 841 29.3
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.4e-74 285.4 829 28.2
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 5.3e-74 283.5 833 28.9
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 6.9e-74 283.1 829 29.6
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.2e-73 282.3 847 32.0
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.5e-73 282.0 829 28.2
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 2.0e-73 281.6 867 27.6
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.0e-73 281.6 845 29.1
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.4e-73 280.8 834 27.2
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.7e-72 278.5 854 27.6
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-72 277.7 834 29.9
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 6.5e-72 276.6 845 29.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 8.4e-72 276.2 850 29.1
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.4e-71 275.4 869 27.6
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.1e-71 273.1 835 29.2
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 6.0e-70 270.0 849 28.2
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.0e-69 269.2 826 28.9
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 2.3e-69 268.1 886 29.0
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.5e-68 265.4 841 28.1
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.9e-68 265.0 302 44.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.9e-68 265.0 846 28.8
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.9e-68 265.0 836 27.6
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 9.6e-68 262.7 790 29.0
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.4e-66 258.1 860 27.2
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.1e-66 257.7 844 27.8
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 6.9e-66 256.5 775 28.1
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 9.0e-66 256.1 423 37.6
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.3e-64 252.3 819 27.0
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-64 251.1 832 26.7
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 2.5e-63 248.1 314 40.8
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.6e-62 245.4 881 27.0
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 4.6e-62 243.8 399 36.1
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 7.9e-62 243.0 777 26.9
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.0e-61 242.7 303 40.6
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 5.1e-61 240.4 845 27.9
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 5.1e-61 240.4 836 28.9
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.1e-60 239.2 831 26.0
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.1e-60 239.2 314 41.7
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.9e-60 238.4 337 41.2
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 3.3e-60 237.7 352 39.5
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.3e-59 235.7 368 41.0
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.3e-59 235.7 297 43.8
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.6e-59 235.3 845 35.4
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 4.8e-59 233.8 828 26.6
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 4.8e-59 233.8 836 27.9
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 4.8e-59 233.8 305 41.6
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 8.2e-59 233.0 383 36.8
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.4e-58 232.3 305 42.6
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 2.4e-58 231.5 859 26.8
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.4e-58 231.5 317 40.4
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 3.1e-58 231.1 866 27.4
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 4.5e-57 227.3 842 27.6
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.9e-57 226.9 847 27.5
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 5.9e-57 226.9 301 41.2
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.0e-56 226.1 323 38.7
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.7e-56 225.3 832 25.5
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.7e-56 225.3 403 33.7
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.9e-56 224.6 841 25.8
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-56 224.6 310 41.3
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.4e-55 222.2 824 26.5
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.5e-55 221.5 856 26.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 5.5e-55 220.3 830 29.4
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 9.4e-55 219.5 329 41.0
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 2.1e-54 218.4 834 26.6
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 2.7e-54 218.0 273 42.9
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.7e-54 218.0 848 25.7
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 4.6e-54 217.2 836 26.1
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 4.6e-54 217.2 837 26.6
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 7.9e-54 216.5 339 38.3
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 7.9e-54 216.5 464 36.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.0e-53 216.1 823 26.6
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 6.7e-53 213.4 341 39.9
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 2.6e-52 211.5 323 38.4
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.3e-52 211.1 312 39.1
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.7e-52 210.3 348 37.6
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 5.7e-52 210.3 301 41.5
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 5.7e-52 210.3 340 38.8
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 9.7e-52 209.5 327 40.1
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 9.7e-52 209.5 340 38.8
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.3e-51 209.1 451 35.3
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.7e-51 208.8 299 41.8
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.8e-50 205.3 311 41.8
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 4.1e-50 204.1 801 25.7
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.7e-48 198.7 830 25.9
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 2.9e-48 198.0 294 38.1
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.0e-48 197.2 297 37.7
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.9e-47 195.3 840 25.2
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.2e-47 194.1 306 39.9
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 7.2e-47 193.4 303 38.3
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 7.2e-47 193.4 276 39.1
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 2.1e-46 191.8 303 37.6
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.1e-46 190.3 281 38.4
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.3e-45 188.3 888 25.3
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 3.9e-45 187.6 320 36.2
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 5.7e-44 183.7 307 36.8
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 2.2e-43 181.8 302 38.4
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.1e-42 179.5 297 36.7
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.4e-42 178.3 304 33.9
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.4e-42 178.3 262 40.1
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.1e-42 176.4 275 38.2
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 1.0e-40 172.9 225 43.6
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.7e-40 172.2 263 39.9
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.7e-38 164.9 263 38.0
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.6e-38 164.5 218 40.4
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.0e-38 163.3 797 24.2
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.8e-34 152.1 227 39.2
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.3e-32 146.0 251 35.9
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 7.2e-31 140.2 266 35.7
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 3.4e-28 131.3 184 39.1
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 6.3e-27 127.1 185 43.8
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.8e-26 125.6 175 44.0
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 8.5e-24 116.7 193 39.4
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 3.6e-22 111.3 193 38.3
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 1.0e-21 109.8 247 31.6
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.8e-21 109.0 170 34.7
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.8e-21 109.0 170 34.7
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.0e-21 108.2 182 36.8
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 6.8e-21 107.1 185 40.0
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.0e-20 105.5 218 34.9
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 3.4e-20 104.8 185 40.0
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.8e-20 103.2 213 35.2
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 4.9e-19 100.9 214 34.6
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.4e-18 98.6 194 36.1
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.7e-16 92.4 96 51.0
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.1e-15 89.7 130 39.2
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.5e-15 89.4 150 31.3
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 5.6e-15 87.4 178 30.3
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.2e-14 86.3 119 42.9
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 2.1e-14 85.5 144 38.2
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 3.6e-14 84.7 184 34.2
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 1.4e-13 82.8 107 42.1
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.4e-13 82.8 130 36.2
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 4.0e-13 81.3 169 35.5
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 2.2e-11 75.5 144 35.4
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 6.4e-11 73.9 137 35.8
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 8.3e-11 73.6 168 30.4
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 4.1e-10 71.2 126 34.1
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 5.4e-10 70.9 219 30.1
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 1.1e-07 63.2 101 37.6
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 1.9e-07 62.4 119 36.1
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.2e-06 59.7 77 44.2


User provided reference genes

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