Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1480.3 741 100.0
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1162.5 839 70.9
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1156.0 839 71.0
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1154.8 839 70.1
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1141.7 839 69.7
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1140.6 839 68.7
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1135.6 839 68.9
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1130.2 842 68.3
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1121.7 840 68.0
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1119.8 842 68.1
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1117.8 842 67.5
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1117.4 839 67.9
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1115.5 839 68.1
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1115.1 839 67.7
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1114.4 839 67.9
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1114.0 839 68.1
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1113.2 839 68.1
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1112.4 839 67.6
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1110.9 839 67.5
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1110.5 841 67.4
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1110.1 839 68.1
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1110.1 839 67.8
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1106.3 839 67.7
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1105.9 839 67.5
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1104.0 841 66.9
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1102.4 871 66.4
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1101.7 839 67.5
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1101.3 869 65.8
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1100.5 838 67.5
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1100.1 841 67.8
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1099.0 839 67.3
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1098.6 839 66.9
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1096.6 840 66.7
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1095.1 839 67.8
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1092.4 839 67.7
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1091.3 839 66.7
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1091.3 839 66.7
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1090.5 827 67.8
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1090.1 839 65.8
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1087.4 839 66.4
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1087.0 839 66.3
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1086.2 859 65.9
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1086.2 839 66.3
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1085.5 839 66.4
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1085.1 840 66.4
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1083.2 839 65.6
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1083.2 832 65.7
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1082.4 839 65.7
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1082.4 839 66.6
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1082.0 839 65.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1081.2 839 66.4
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1080.1 839 65.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1078.9 842 65.8
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1078.5 830 66.6
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1078.5 840 65.5
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1078.2 840 65.5
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1078.2 839 65.2
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1076.6 840 65.1
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1076.2 840 66.3
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 5.1e-312 1074.7 840 65.4
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 5.1e-312 1074.7 846 65.7
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 1.0e-311 1072.8 839 65.3
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 6.1e-311 1070.5 846 65.0
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 1.3e-310 1069.3 837 65.6
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 1.7e-310 1068.9 840 65.4
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 2.2e-310 1068.5 846 64.9
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 3.9e-310 1067.8 840 65.4
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 5.0e-310 1067.4 839 64.7
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 1.1e-309 1066.2 915 62.1
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 1.5e-309 1065.8 782 68.9
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 2.5e-309 1065.1 868 64.6
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 1.2e-308 1062.8 846 64.7
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.6e-308 1062.4 839 64.5
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 8.0e-308 1060.1 838 65.3
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 1.4e-307 1059.3 912 61.6
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 2.0e-306 1055.4 852 63.6
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 6.3e-305 1050.4 968 59.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 8.3e-305 1050.0 803 67.6
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 1.1e-304 1049.7 841 64.3
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 2.4e-304 1048.5 859 64.6
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.5e-303 1044.3 905 60.4
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 1.0e-302 1043.1 812 67.0
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 8.0e-300 1033.5 912 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 1.0e-299 1033.1 826 63.3
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 7.5e-298 1026.9 850 63.5
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 2.8e-297 1025.0 818 64.7
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 3.7e-297 1024.6 765 68.4
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 7.0e-296 1020.4 791 66.9
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 1.9e-293 1012.3 844 61.8
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 4.3e-293 1011.1 825 63.4
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 6.8e-291 1003.8 827 63.2
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 1.7e-289 999.2 766 66.8
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 8.0e-284 980.3 842 61.2
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 8.0e-284 980.3 777 64.7
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 1.1e-283 979.9 767 65.3
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 6.8e-283 977.2 785 63.9
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 1.2e-282 976.5 752 66.5
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 3.4e-282 974.9 851 59.8
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 1.6e-279 966.1 844 60.2
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 5.6e-277 957.6 842 60.6
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 7.1e-272 940.6 589 79.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.1e-267 926.8 839 57.3
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 1.1e-261 906.7 549 80.3
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 2.5e-261 905.6 755 60.9
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 4.0e-259 898.3 839 58.0
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 1.4e-251 873.2 698 64.2
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 3.4e-234 815.5 816 56.0
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.1e-213 747.3 605 64.6
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 2.5e-200 703.0 419 82.1
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 1.2e-181 641.0 542 60.7
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 9.2e-155 551.6 513 56.9
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.2e-147 526.6 330 78.2
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 8.5e-116 422.2 301 73.4
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.1e-106 391.0 255 76.1
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 4.0e-89 333.6 194 83.0
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.7e-79 301.6 389 46.8
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.3e-67 260.8 161 75.2
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 5.7e-64 250.0 276 51.8
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.4e-62 245.4 182 69.2
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 7.0e-54 216.5 139 77.7
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.0e-53 213.4 140 72.9
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 4.4e-48 197.2 158 63.3
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 2.9e-47 194.5 158 59.5
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 7.6e-40 169.9 117 72.6
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.2e-39 168.3 94 84.0
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 9.0e-33 146.4 83 81.9
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 2.1e-29 135.2 138 50.0
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 4.8e-26 124.0 82 76.8
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.1e-22 112.8 84 65.5
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.2e-22 111.3 76 73.7
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.6e-21 109.0 68 75.0
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 4.3e-19 100.9 74 67.6
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 4.5e-16 90.9 66 68.2
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 1.8e-12 79.0 105 46.7
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.4e-09 69.3 42 83.3
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 1.8e-09 68.9 49 67.3


User provided reference genes

Program Settings