Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.9e-156 555.4 340 100.0
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.2e-86 322.8 354 65.3
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 9.3e-86 321.2 352 65.3
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-84 317.4 352 64.5
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.8e-82 308.9 339 65.5
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.1e-81 307.8 335 65.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.4e-80 302.8 340 65.3
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 4.5e-80 302.4 340 64.4
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.0e-79 301.2 340 65.0
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.3e-79 300.8 350 63.1
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.7e-79 300.4 343 64.1
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.9e-79 299.7 340 64.7
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.0e-79 298.9 340 64.7
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 8.4e-79 298.1 338 63.9
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.9e-78 297.0 368 59.0
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 4.2e-78 295.8 340 62.1
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 9.3e-78 294.7 283 72.8
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.6e-77 293.9 351 62.7
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.1e-77 293.5 340 62.9
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.7e-77 293.1 341 63.3
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 3.5e-77 292.7 338 63.3
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.5e-77 292.7 339 63.1
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 6.1e-77 292.0 350 61.1
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 7.9e-77 291.6 350 63.4
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.8e-76 290.4 350 60.0
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 3.0e-76 289.7 343 63.3
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 5.1e-76 288.9 344 62.8
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 5.1e-76 288.9 344 62.8
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 5.1e-76 288.9 342 62.3
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 8.7e-76 288.1 309 68.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.1e-75 287.7 346 61.6
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.5e-75 287.3 343 61.8
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 7.4e-75 285.0 346 61.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 9.7e-75 284.6 347 63.1
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.3e-74 284.3 345 60.9
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.6e-74 283.9 329 63.5
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.2e-74 283.5 341 61.6
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 3.7e-74 282.7 345 61.4
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 4.8e-74 282.3 342 60.5
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 4.8e-74 282.3 348 61.8
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.4e-73 280.8 285 70.5
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 2.4e-73 280.0 341 61.6
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 3.1e-73 279.6 345 60.3
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.1e-73 279.6 352 58.8
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.1e-73 279.3 340 62.9
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 4.1e-73 279.3 335 63.3
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 4.1e-73 279.3 341 60.7
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 9.0e-73 278.1 359 61.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.2e-72 277.7 346 60.1
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.5e-72 277.3 350 59.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.5e-72 277.3 340 62.6
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.5e-72 277.3 337 62.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.6e-72 276.6 335 63.0
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 3.4e-72 276.2 347 61.7
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 4.5e-72 275.8 347 59.7
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.9e-72 275.4 277 69.3
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 7.7e-72 275.0 345 60.0
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.0e-71 274.6 337 60.8
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.3e-71 274.2 340 62.1
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.9e-71 273.1 307 64.2
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 3.8e-71 272.7 352 57.4
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 5.0e-71 272.3 341 61.3
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 8.5e-71 271.6 347 59.4
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.5e-71 271.6 335 61.8
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.1e-70 271.2 350 52.6
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.1e-70 271.2 294 66.7
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.4e-70 270.8 351 59.8
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.4e-70 270.8 337 58.5
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 5.5e-70 268.9 340 58.8
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.2e-70 268.5 353 56.9
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.1e-69 266.9 364 57.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.6e-69 266.2 332 62.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.6e-69 266.2 338 57.4
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 4.6e-69 265.8 280 68.6
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 4.6e-69 265.8 359 57.9
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 6.1e-69 265.4 334 59.9
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.4e-68 264.2 283 68.2
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 2.3e-68 263.5 343 60.3
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 3.3e-67 259.6 279 65.6
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.7e-66 257.3 299 64.2
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 2.2e-66 256.9 234 56.8
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 2.2e-66 256.9 341 56.9
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 1.4e-65 254.2 350 57.7
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-65 254.2 244 54.1
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.4e-65 253.4 391 40.4
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 5.3e-65 252.3 352 56.5
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.4e-64 249.6 219 58.4
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.9e-64 248.8 222 56.3
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 7.7e-64 248.4 280 65.7
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.3e-63 247.7 172 67.4
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 5.0e-63 245.7 334 59.9
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-62 244.6 333 58.9
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 7.2e-62 241.9 349 54.7
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.2e-61 241.1 332 58.4
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 6.1e-61 238.8 342 58.2
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.3e-60 236.9 339 51.0
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 1.1e-59 234.6 336 58.0
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.2e-58 228.4 334 56.9
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.1e-57 228.0 331 58.3
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.4e-57 226.9 275 65.1
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 4.1e-57 226.1 334 56.3
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 4.1e-57 226.1 338 51.2
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 4.1e-57 226.1 216 54.6
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.2e-56 224.6 313 59.4
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 4.5e-56 222.6 332 55.7
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 5.9e-56 222.2 242 71.1
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.1e-54 218.0 280 52.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.5e-54 217.6 363 38.0
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.6e-53 214.2 164 61.0
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-53 214.2 336 55.1
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.1e-53 213.8 317 39.7
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 5.7e-51 205.7 418 47.6
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 2.8e-50 203.4 262 63.4
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 8.8e-44 181.8 180 52.2
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 5.7e-43 179.1 277 55.2
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.8e-42 176.0 137 62.8
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 5.9e-40 169.1 285 55.4
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 5.0e-39 166.0 161 52.8
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 8.5e-39 165.2 183 51.4
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 4.0e-36 156.4 194 72.2
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.0e-35 154.1 189 73.5
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.9e-31 140.2 120 53.3
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 5.6e-30 136.0 238 57.6
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.7e-26 124.4 177 39.0
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-26 124.0 177 39.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.2e-25 120.2 172 39.0
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-21 108.2 142 79.6
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 5.2e-20 102.8 83 55.4
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 8.9e-20 102.1 108 45.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.4e-19 100.1 81 61.7
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 7.5e-19 99.0 155 72.3
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 6.0e-16 89.4 84 56.0
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.0e-15 88.6 127 79.5
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.1e-13 80.9 133 58.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 7.5e-11 72.4 59 61.0
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.2e-10 70.9 122 77.9
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.2e-09 67.0 40 67.5
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.3e-07 61.6 41 61.0
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 6.6e-07 59.3 54 61.1
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 7.3e-06 55.8 56 48.2
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 9.5e-06 55.5 47 53.2


User provided reference genes

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