Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 2.9e-196 688.3 340 100.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.2e-125 453.8 340 67.9
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 2.1e-122 443.0 315 70.8
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.2e-120 437.2 337 66.8
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.2e-120 437.2 334 68.0
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 3.4e-120 435.6 336 66.7
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 7.6e-120 434.5 317 69.1
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 7.6e-120 434.5 333 66.4
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.3e-119 433.7 334 66.2
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.7e-119 433.3 333 65.8
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.2e-119 433.0 341 65.1
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.9e-119 432.6 338 64.5
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.7e-119 432.2 335 65.4
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.7e-119 432.2 335 65.4
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 3.7e-119 432.2 338 64.5
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 8.3e-119 431.0 319 68.3
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.1e-118 430.6 312 68.9
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.4e-118 430.3 337 65.9
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.4e-118 430.3 312 68.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.9e-118 429.9 364 62.9
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 2.4e-118 429.5 339 64.9
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.2e-118 429.1 338 64.2
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 4.1e-118 428.7 334 65.3
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 2.1e-117 426.4 351 63.2
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 2.1e-117 426.4 336 64.9
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.1e-117 426.4 335 65.7
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.7e-117 426.0 332 66.0
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 2.7e-117 426.0 340 63.2
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 3.5e-117 425.6 335 64.8
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 7.8e-117 424.5 338 64.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 7.8e-117 424.5 337 65.0
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 1.0e-116 424.1 357 62.5
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.3e-116 423.7 331 64.7
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 3.0e-116 422.5 313 68.4
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.0e-116 422.5 352 61.9
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 6.6e-116 421.4 335 64.2
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 6.6e-116 421.4 341 64.2
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 8.6e-116 421.0 335 64.2
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 8.6e-116 421.0 335 64.2
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 8.6e-116 421.0 338 62.7
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.1e-115 420.6 313 68.4
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.5e-115 420.2 311 68.5
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.9e-115 419.9 337 63.5
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 4.3e-115 418.7 315 66.7
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 4.3e-115 418.7 335 64.2
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 5.6e-115 418.3 337 62.0
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 5.6e-115 418.3 310 68.4
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 9.6e-115 417.5 333 64.3
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.6e-114 416.8 335 63.9
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 1.6e-114 416.8 316 65.5
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 2.1e-114 416.4 340 64.4
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.8e-114 416.0 310 68.1
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 2.8e-114 416.0 351 63.0
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 4.7e-114 415.2 335 63.3
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 4.7e-114 415.2 335 63.3
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 6.2e-114 414.8 334 65.6
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 8.1e-114 414.5 344 60.8
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.1e-113 414.1 335 63.0
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.1e-113 414.1 314 66.6
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.8e-113 413.3 335 63.6
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 8.9e-113 411.0 333 61.3
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.6e-112 409.5 336 63.7
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.7e-111 406.8 311 64.3
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 4.9e-111 405.2 345 60.3
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 6.4e-111 404.8 313 64.5
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.1e-110 404.1 333 62.5
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.9e-110 403.3 336 62.5
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 2.4e-110 402.9 338 63.0
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 3.0e-108 396.0 345 60.9
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.1e-107 394.0 309 62.8
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 2.5e-107 392.9 363 59.5
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 2.5e-107 392.9 309 62.8
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.3e-106 390.6 339 60.2
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 2.9e-103 379.4 335 60.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.4e-103 378.3 287 66.6
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.1e-102 377.5 408 53.9
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.2e-102 375.9 331 58.9
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.4e-102 375.2 341 59.8
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 5.4e-102 375.2 280 65.4
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.2e-101 374.0 313 63.6
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.7e-101 372.9 263 71.9
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 7.9e-101 371.3 263 71.1
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.3e-100 370.5 330 56.4
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 8.7e-100 367.9 335 57.3
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.9e-99 366.7 327 59.6
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 9.6e-99 364.4 333 56.8
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 6.9e-97 358.2 339 58.7
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 6.9e-97 358.2 258 70.5
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 2.0e-96 356.7 327 56.0
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 7.6e-96 354.8 264 69.7
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 2.9e-95 352.8 313 60.1
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 4.9e-95 352.1 258 68.6
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.4e-94 350.5 269 66.5
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.5e-91 340.5 232 72.0
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.6e-91 338.6 315 58.7
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 2.8e-90 336.3 256 66.0
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 4.0e-89 332.4 271 64.2
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 5.8e-88 328.6 258 65.1
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.3e-87 327.4 280 56.4
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 2.5e-86 323.2 254 64.2
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 3.5e-85 319.3 256 62.9
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.9e-84 315.8 210 75.2
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 9.0e-81 304.7 340 48.5
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.8e-76 290.4 312 51.9
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.8e-74 283.1 325 47.1
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.4e-70 270.8 181 72.9
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.7e-66 257.3 204 63.7
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.3e-63 247.7 326 44.5
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.9e-55 219.9 230 52.6
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 1.8e-52 210.7 441 32.9
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.0e-47 194.9 136 70.6
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.5e-46 191.0 381 33.9
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.2e-39 167.2 111 73.9
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 6.1e-37 159.1 200 48.0
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 4.5e-32 142.9 280 30.0
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.6e-27 127.1 130 53.1
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 7.5e-27 125.6 130 52.3
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.4e-25 120.6 124 49.2
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 7.0e-25 119.0 103 60.2
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.9e-22 110.9 98 59.2
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 5.6e-22 109.4 242 30.2
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 9.5e-22 108.6 92 58.7
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.8e-20 104.4 74 71.6
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.3e-20 104.0 74 67.6
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 3.4e-19 100.1 72 66.7
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 3.4e-19 100.1 96 56.2
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.3e-18 98.2 81 60.5
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 7.1e-09 65.9 111 32.4
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 5.1e-07 59.7 172 25.6
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 6.6e-07 59.3 150 26.0
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 8.6e-07 58.9 126 32.5
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 8.6e-07 58.9 172 25.6
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 8.6e-07 58.9 127 29.9
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 4.3e-06 56.6 96 34.4
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 5.6e-06 56.2 90 33.3
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 7.3e-06 55.8 96 34.4
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 9.5e-06 55.5 151 28.5


User provided reference genes

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