Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.5e-151 539.7 306 100.0
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 4.7e-28 129.4 203 42.9
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 8.0e-28 128.6 172 48.8
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 8.0e-28 128.6 177 50.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.8e-27 127.5 173 46.2
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 2.3e-27 127.1 175 48.0
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 2.3e-27 127.1 207 42.0
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 2.3e-27 127.1 168 51.8
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.0e-27 126.7 173 47.4
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 4.0e-27 126.3 184 46.7
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 6.8e-27 125.6 198 44.4
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 6.8e-27 125.6 194 44.8
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.2e-26 124.8 194 47.9
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 2.0e-26 124.0 206 40.8
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 2.6e-26 123.6 172 48.8
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 3.4e-26 123.2 172 49.4
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 4.4e-26 122.9 180 45.0
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 5.7e-26 122.5 171 49.1
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 7.5e-26 122.1 176 47.7
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 7.5e-26 122.1 169 48.5
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 7.5e-26 122.1 177 47.5
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 9.8e-26 121.7 175 46.9
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 9.8e-26 121.7 178 47.8
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 9.8e-26 121.7 165 49.7
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 9.8e-26 121.7 165 49.7
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 9.8e-26 121.7 165 49.7
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.7e-25 120.9 176 47.2
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.7e-25 120.9 172 45.9
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 2.2e-25 120.6 177 49.7
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.2e-25 120.6 173 44.5
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.2e-25 120.6 206 42.2
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 3.7e-25 119.8 175 49.1
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 3.7e-25 119.8 168 48.8
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 3.7e-25 119.8 167 49.1
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.8e-25 119.4 180 48.3
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.8e-25 119.4 176 46.6
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.8e-25 119.4 176 46.0
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 6.3e-25 119.0 176 45.5
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 6.3e-25 119.0 177 46.3
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 8.3e-25 118.6 178 48.3
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 8.3e-25 118.6 176 46.0
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 8.3e-25 118.6 204 40.7
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.4e-24 117.9 176 46.0
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.4e-24 117.9 179 45.8
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.8e-24 117.5 171 47.4
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.4e-24 117.1 175 46.3
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.1e-24 116.7 175 45.1
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.1e-24 116.7 172 45.9
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.1e-24 116.7 181 47.0
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 3.1e-24 116.7 174 45.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.1e-24 116.3 176 46.0
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.1e-24 116.3 177 47.5
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 4.1e-24 116.3 168 45.2
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 7.0e-24 115.5 173 48.0
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 7.0e-24 115.5 171 45.0
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 7.0e-24 115.5 168 48.2
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 7.0e-24 115.5 174 44.8
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.2e-23 114.8 171 47.4
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.2e-23 114.8 171 48.0
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.2e-23 114.8 182 45.1
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.6e-23 114.4 175 46.3
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.6e-23 114.4 172 45.9
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.0e-23 114.0 178 44.4
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 2.0e-23 114.0 175 46.3
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 2.7e-23 113.6 169 46.7
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.7e-23 113.6 181 47.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 3.5e-23 113.2 166 48.8
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 4.5e-23 112.8 194 42.8
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.0e-22 111.7 183 45.9
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.0e-22 111.7 168 47.6
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.0e-22 111.7 168 47.6
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.0e-22 111.7 159 48.4
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.0e-22 111.7 159 48.4
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.0e-22 111.7 167 46.1
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.3e-22 111.3 172 45.3
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.3e-22 111.3 158 46.2
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.7e-22 110.9 203 41.4
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.2e-22 110.5 178 43.8
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 5.0e-22 109.4 170 43.5
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 5.0e-22 109.4 177 45.2
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 5.0e-22 109.4 166 45.8
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 6.5e-22 109.0 163 44.2
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.5e-22 109.0 172 43.0
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 6.5e-22 109.0 174 44.8
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 8.5e-22 108.6 172 44.8
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.1e-21 108.2 171 42.1
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.5e-21 107.8 169 46.2
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 3.2e-21 106.7 169 46.7
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 4.2e-21 106.3 143 46.9
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 4.2e-21 106.3 173 42.2
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 4.2e-21 106.3 166 45.2
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.5e-21 105.9 173 42.8
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 5.5e-21 105.9 160 46.2
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 7.2e-21 105.5 164 43.9
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 7.2e-21 105.5 164 43.9
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 7.2e-21 105.5 198 34.8
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 9.4e-21 105.1 96 56.2
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 9.4e-21 105.1 165 44.2
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 9.4e-21 105.1 178 43.3
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 9.4e-21 105.1 164 43.9
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 9.4e-21 105.1 165 44.2
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 9.4e-21 105.1 169 44.4
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 9.4e-21 105.1 173 43.9
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.2e-20 104.8 244 32.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.2e-20 104.8 182 43.4
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.6e-20 104.4 164 44.5
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.1e-20 104.0 164 42.7
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.1e-20 104.0 165 44.2
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.6e-20 103.2 162 43.8
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 3.6e-20 103.2 163 46.6
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 3.6e-20 103.2 172 43.0
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 3.6e-20 103.2 199 39.2
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 4.7e-20 102.8 161 44.1
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 4.7e-20 102.8 162 45.1
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 6.1e-20 102.4 184 41.3
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.0e-19 101.7 134 47.8
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.4e-19 101.3 163 43.6
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.4e-19 101.3 172 44.8
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.8e-19 100.9 166 44.0
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 3.0e-19 100.1 168 42.9
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.0e-19 99.8 179 39.7
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 5.2e-19 99.4 183 42.1
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 5.2e-19 99.4 96 55.2
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.8e-19 99.0 144 43.1
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 8.8e-19 98.6 172 44.2
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.2e-18 98.2 176 39.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.5e-18 97.8 170 43.5
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.5e-18 97.8 176 39.8
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.0e-18 97.4 178 41.0
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 2.6e-18 97.1 162 41.4
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 2.6e-18 97.1 162 41.4
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.4e-18 96.7 164 42.7
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 4.4e-18 96.3 144 43.8
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 7.5e-18 95.5 103 52.4
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 7.5e-18 95.5 163 42.3
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 9.8e-18 95.1 161 39.8
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.2e-17 94.0 152 40.8
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.8e-17 93.6 161 41.0
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.8e-17 93.6 151 43.0
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 4.9e-17 92.8 179 40.8
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 6.3e-17 92.4 161 40.4
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.0e-15 87.4 162 38.9
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.7e-15 87.0 162 38.9
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.9e-15 85.9 200 34.5
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 7.7e-15 85.5 95 51.6
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-14 84.7 163 36.8
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 2.3e-14 84.0 163 36.8
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.5e-13 81.3 171 38.0
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-13 80.5 154 35.7
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.2e-12 78.2 194 35.6
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 2.8e-12 77.0 136 39.7
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.8e-11 74.3 155 37.4
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 3.0e-11 73.6 160 38.1
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 1.5e-10 71.2 66 56.1
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 2.6e-10 70.5 131 38.9
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 3.4e-10 70.1 169 36.7
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 7.0e-08 62.4 69 52.2
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 9.2e-08 62.0 119 36.1
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-07 61.6 51 60.8
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.7e-07 60.5 141 32.6
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 5.9e-07 59.3 69 43.5


User provided reference genes

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