Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G072 Amborella trichopoda HOM05D000090 ORTHO05D010509 2.8e-37 158.3 91 100.0
ATR0580G222 Amborella trichopoda HOM05D000090 ORTHO05D000083 6.9e-28 127.1 89 75.3
ATR0580G327 Amborella trichopoda HOM05D000090 ORTHO05D010509 1.9e-14 82.4 87 55.2
ATR0580G340 Amborella trichopoda HOM05D000090 ORTHO05D000083 8.2e-13 77.0 92 50.0
FAN09G4625 Fragaria x ananassa HOM05D000090 ORTHO05D000083 4.2e-09 64.7 87 46.0
Solyc03g114175.1 Solanum lycopersicum HOM05D000090 ORTHO05D000083 4.2e-09 64.7 89 43.8
Rhsim03G0087300 Rhododendron simsii HOM05D000090 ORTHO05D000083 5.5e-09 64.3 91 45.1
PGSC0003DMG400024594 Solanum tuberosum HOM05D000090 ORTHO05D000083 5.5e-09 64.3 89 42.7
SGA_v2.0_scaffold135G34869 Striga asiatica HOM05D000090 ORTHO05D000083 9.4e-09 63.5 90 42.2
TAR629G1755 Trochodendron aralioides HOM05D000090 ORTHO05D000083 9.4e-09 63.5 89 40.4
TAR629G2243 Trochodendron aralioides HOM05D000090 ORTHO05D000083 9.4e-09 63.5 91 46.2
FvH4_6g50530 Fragaria vesca HOM05D000090 ORTHO05D000083 1.6e-08 62.8 86 45.3
FAN14G3800 Fragaria x ananassa HOM05D000090 ORTHO05D000083 1.6e-08 62.8 86 45.3
HPP92_018536 Vanilla planifolia HOM05D000090 ORTHO05D000083 1.6e-08 62.8 85 47.1
MSTRG.21788 Avicennia marina HOM05D000090 ORTHO05D000083 2.1e-08 62.4 90 45.6
MSTRG.24004 Avicennia marina HOM05D000090 ORTHO05D000083 2.1e-08 62.4 90 45.6
PGR142G1109 Punica granatum HOM05D000090 ORTHO05D000083 2.1e-08 62.4 89 49.4
QL02p076898 Quercus lobata HOM05D000090 ORTHO05D000083 2.1e-08 62.4 89 43.8
VMungo1383G3714 Vigna mungo HOM05D000090 ORTHO05D000083 2.7e-08 62.0 85 44.7
BcaB08g36944 Brassica carinata HOM05D000090 ORTHO05D000083 3.6e-08 61.6 91 44.0
TAR371G0656 Trochodendron aralioides HOM05D000090 ORTHO05D000083 3.6e-08 61.6 90 37.8
GSVIVG01016138001 Vitis vinifera HOM05D000090 ORTHO05D000658 3.6e-08 61.6 89 42.7
Peaxi162Scf00368g00011 Petunia axillaris HOM05D000090 ORTHO05D000083 4.7e-08 61.2 90 43.3
vmacro18236 Vaccinium macrocarpon HOM05D000090 ORTHO05D000083 4.7e-08 61.2 85 43.5
Aqoxy3G00993 Aquilegia oxysepala HOM05D000090 ORTHO05D000083 6.1e-08 60.8 86 44.2
BcaC04g19006 Brassica carinata HOM05D000090 ORTHO05D000083 6.1e-08 60.8 88 47.7
Eucgr.A01139 Eucalyptus grandis HOM05D000090 ORTHO05D000083 6.1e-08 60.8 87 44.8
MBI14_g36172_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D000083 7.9e-08 60.5 90 44.4
Nn3g16911 Nelumbo nucifera HOM05D000100 ORTHO05D010509 7.9e-08 60.5 89 40.4
Peaxi162Scf00017g02717 Petunia axillaris HOM05D000090 ORTHO05D000083 7.9e-08 60.5 90 40.0
Rhsim08G0056100 Rhododendron simsii HOM05D000090 ORTHO05D000083 7.9e-08 60.5 88 42.0
FAN02G4179 Fragaria x ananassa HOM05D000090 ORTHO05D000083 1.0e-07 60.1 86 44.2
Lj1g0022600 Lotus japonicus HOM05D000090 ORTHO05D000083 1.0e-07 60.1 90 37.8
Oeu004700.1 Olea europaea HOM05D000090 ORTHO05D000083 1.0e-07 60.1 85 42.4
Oeu041557.1 Olea europaea HOM05D000100 ORTHO05D000083 1.0e-07 60.1 89 40.4
TAR371G0600 Trochodendron aralioides HOM05D000090 ORTHO05D000083 1.0e-07 60.1 90 37.8
Oeu024765.1 Olea europaea HOM05D000090 ORTHO05D000083 1.4e-07 59.7 89 39.3
Oeu062988.1 Olea europaea HOM05D000090 ORTHO05D000083 1.4e-07 59.7 85 40.0
Rhsim08G0056000 Rhododendron simsii HOM05D000090 ORTHO05D000083 1.4e-07 59.7 85 44.7
RhsimUnG0224100 Rhododendron simsii HOM05D000090 ORTHO05D000083 1.4e-07 59.7 85 44.7
Potri.018G009000 Populus trichocarpa HOM05D000090 ORTHO05D000083 1.8e-07 59.3 86 43.0
Sp6g29220 Schrenkiella parvula HOM05D000090 ORTHO05D000083 1.8e-07 59.3 91 40.7
THA.LOC104821063 Tarenaya hassleriana HOM05D000090 ORTHO05D000083 1.8e-07 59.3 87 46.0
A10p23870 Brassica napus HOM05D000090 ORTHO05D000083 2.3e-07 58.9 88 45.5
CiPaw.03G036800 Carya illinoinensis HOM05D000090 ORTHO05D000083 2.3e-07 58.9 85 43.5
Hma1.2p1_0701F.1_g205960 Hydrangea macrophylla HOM05D000090 ORTHO05D000083 2.3e-07 58.9 86 38.4
Lsat_1_v5_gn_2_92400 Lactuca sativa HOM05D000090 ORTHO05D000083 2.3e-07 58.9 85 43.5
Nitab4.5_0000852g0130 Nicotiana tabacum HOM05D000090 ORTHO05D000083 2.3e-07 58.9 90 41.1
vmacro18235 Vaccinium macrocarpon HOM05D000090 ORTHO05D000083 2.3e-07 58.9 85 41.2
ClCG02G006150 Citrullus lanatus HOM05D000090 ORTHO05D000083 3.0e-07 58.5 86 45.3
ClCG09G018460 Citrullus lanatus HOM05D000090 ORTHO05D000083 3.0e-07 58.5 88 39.8
Cc07_g02370 Coffea canephora HOM05D000090 ORTHO05D000083 3.0e-07 58.5 85 41.2
Lsat_1_v5_gn_2_92340 Lactuca sativa HOM05D000090 ORTHO05D000083 3.0e-07 58.5 85 42.4
Sc06g0001610 Simmondsia chinensis HOM05D000090 ORTHO05D000083 3.0e-07 58.5 85 44.7
PGSC0003DMG400006949 Solanum tuberosum HOM05D000090 ORTHO05D000083 3.0e-07 58.5 90 42.2
TAR371G0216 Trochodendron aralioides HOM05D000090 ORTHO05D000083 3.0e-07 58.5 89 38.2
TAR629G0437 Trochodendron aralioides HOM05D000090 ORTHO05D000083 3.0e-07 58.5 92 45.7
BcaB08g34674 Brassica carinata HOM05D000090 ORTHO05D000083 3.9e-07 58.2 91 42.9
Thhalv10015356m.g Eutrema salsugineum HOM05D000090 ORTHO05D000083 3.9e-07 58.2 91 40.7
HanXRQChr12g0385481 Helianthus annuus HOM05D000090 ORTHO05D000083 3.9e-07 58.2 85 42.4
QL02p076946 Quercus lobata HOM05D000090 ORTHO05D000083 3.9e-07 58.2 86 44.2
RhsimUnG0224200 Rhododendron simsii HOM05D000090 ORTHO05D000083 3.9e-07 58.2 88 39.8
CARHR107160 Cardamine hirsuta HOM05D000090 ORTHO05D000083 5.1e-07 57.8 91 45.1
FAN05G4123 Fragaria x ananassa HOM05D000090 ORTHO05D000083 5.1e-07 57.8 86 45.3
FAN05G5425 Fragaria x ananassa HOM05D000090 ORTHO05D000083 5.1e-07 57.8 86 45.3
Glyma.16G073800 Glycine max HOM05D000090 ORTHO05D000083 5.1e-07 57.8 86 43.0
HanXRQChr12g0385501 Helianthus annuus HOM05D000090 ORTHO05D000083 5.1e-07 57.8 86 43.0
Rhsim08G0056300 Rhododendron simsii HOM05D000090 ORTHO05D000083 5.1e-07 57.8 85 43.5
TAR371G0375 Trochodendron aralioides HOM05D000090 ORTHO05D010509 5.1e-07 57.8 90 37.8
vmacro00169 Vaccinium macrocarpon HOM05D000090 ORTHO05D000083 5.1e-07 57.8 89 44.9
C09p62350 Brassica napus HOM05D000090 ORTHO05D000083 6.7e-07 57.4 88 45.5
BolC9t59072H Brassica oleracea HOM05D000090 ORTHO05D000083 6.7e-07 57.4 88 45.5
BraA10t44451Z Brassica rapa HOM05D000090 ORTHO05D000083 6.7e-07 57.4 88 44.3
CARHR198490 Cardamine hirsuta HOM05D000090 ORTHO05D000083 6.7e-07 57.4 91 40.7
Lju41C34T5 Lonicera japonica HOM05D000090 ORTHO05D000083 6.7e-07 57.4 85 43.5
Manes.16G134100 Manihot esculenta HOM05D000090 ORTHO05D000083 6.7e-07 57.4 86 46.5
PGR102G2172 Punica granatum HOM05D000100 ORTHO05D000052 6.7e-07 57.4 84 44.0
QL06p021556 Quercus lobata HOM05D000090 ORTHO05D000083 6.7e-07 57.4 89 40.4
PGSC0003DMG400024593 Solanum tuberosum HOM05D000090 ORTHO05D000083 6.7e-07 57.4 84 41.7
TAR383G0840 Trochodendron aralioides HOM05D000090 ORTHO05D000083 6.7e-07 57.4 86 41.9
Migut.H00135 Erythranthe guttata HOM05D000090 ORTHO05D000083 8.8e-07 57.0 85 41.2
HanXRQChr12g0385491 Helianthus annuus HOM05D000090 ORTHO05D000083 8.8e-07 57.0 85 41.2
Lj9A180T99 Lonicera japonica HOM05D000090 ORTHO05D000083 8.8e-07 57.0 91 44.0
Lj9C179G0 Lonicera japonica HOM05D000090 ORTHO05D000083 8.8e-07 57.0 87 42.5
MD17G1035900 Malus domestica HOM05D000090 ORTHO05D000083 8.8e-07 57.0 89 42.7
Manes.17G122800 Manihot esculenta HOM05D000090 ORTHO05D000083 8.8e-07 57.0 89 42.7
Nitab4.5_0003857g0020 Nicotiana tabacum HOM05D000090 ORTHO05D000083 8.8e-07 57.0 90 40.0
Nitab4.5_0011033g0010 Nicotiana tabacum HOM05D000090 ORTHO05D000083 8.8e-07 57.0 88 44.3
C03p57590 Brassica napus HOM05D000090 ORTHO05D000083 1.1e-06 56.6 88 43.2
Lj9A186T109 Lonicera japonica HOM05D000090 ORTHO05D000083 1.1e-06 56.6 87 42.5
MD17G1036200 Malus domestica HOM05D000090 ORTHO05D000083 1.1e-06 56.6 84 42.9
Potri.006G272500 Populus trichocarpa HOM05D000090 ORTHO05D000083 1.1e-06 56.6 86 44.2
Prupe.1G458200 Prunus persica HOM05D000090 ORTHO05D000083 1.1e-06 56.6 88 43.2
MSTRG.24006 Avicennia marina HOM05D000090 ORTHO05D000083 1.5e-06 56.2 90 41.1
EL10Ac2g03355 Beta vulgaris HOM05D000090 ORTHO05D000083 1.5e-06 56.2 85 42.4
AUR62038392 Chenopodium quinoa HOM05D000090 ORTHO05D000083 1.5e-06 56.2 85 42.4
Peaxi162Scf00017g02718 Petunia axillaris HOM05D000090 ORTHO05D000083 1.5e-06 56.2 90 40.0
Sopen03g033250 Solanum pennellii HOM05D000090 ORTHO05D000083 1.5e-06 56.2 89 39.3
BcaC01g02974 Brassica carinata HOM05D000090 ORTHO05D000083 2.0e-06 55.8 88 43.2
BolC3t18034H Brassica oleracea HOM05D000090 ORTHO05D000083 2.0e-06 55.8 88 43.2
MELO3C021478.2 Cucumis melo HOM05D000090 ORTHO05D000083 2.0e-06 55.8 93 37.6
MELO3C021482.2 Cucumis melo HOM05D000090 ORTHO05D000083 2.0e-06 55.8 90 38.9
CsaV3_5G037740 Cucumis sativus L. HOM05D000090 ORTHO05D000083 2.0e-06 55.8 92 40.2
Hma1.2p1_0697F.1_g204760 Hydrangea macrophylla HOM05D000090 ORTHO05D000083 2.0e-06 55.8 85 42.4
MBI14_g08067_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D000083 2.0e-06 55.8 92 41.3
TAR629G2353 Trochodendron aralioides HOM05D000100 ORTHO05D010509 2.0e-06 55.8 85 38.8
AT2G16890 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 2.6e-06 55.5 90 43.3
A03p46110 Brassica napus HOM05D000090 ORTHO05D000083 2.6e-06 55.5 88 42.0
BraA03t13739Z Brassica rapa HOM05D000090 ORTHO05D000083 2.6e-06 55.5 88 42.0
Lj9A178G29 Lonicera japonica HOM05D000090 ORTHO05D000083 2.6e-06 55.5 88 43.2
Lj9A186T107 Lonicera japonica HOM05D000090 ORTHO05D000083 2.6e-06 55.5 87 41.4
Oeu041558.1 Olea europaea HOM05D000090 ORTHO05D000083 2.6e-06 55.5 89 38.2
Oeu062990.1 Olea europaea HOM05D000090 ORTHO05D000083 2.6e-06 55.5 85 42.4
Oeu062992.4 Olea europaea HOM05D000090 ORTHO05D000083 2.6e-06 55.5 85 42.4
CSS0000806 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D000083 3.3e-06 55.1 85 42.4
Ciclev10015105m.g Citrus clementina HOM05D000090 ORTHO05D000083 3.3e-06 55.1 88 43.2
ECA238G3714 Erigeron canadensis HOM05D000090 ORTHO05D000083 3.3e-06 55.1 85 37.6
Potri.006G272600 Populus trichocarpa HOM05D000090 ORTHO05D000083 3.3e-06 55.1 86 41.9
Aqoxy3G02996 Aquilegia oxysepala HOM05D000090 ORTHO05D000083 4.4e-06 54.7 92 41.3
AL3G49630 Arabidopsis lyrata HOM05D000090 ORTHO05D000083 4.4e-06 54.7 91 42.9
Eucgr.J03157 Eucalyptus grandis HOM05D000090 ORTHO05D000083 4.4e-06 54.7 90 45.6
Lj9A180T100 Lonicera japonica HOM05D000090 ORTHO05D000083 4.4e-06 54.7 88 42.0
Lalb_Chr10g0091071 Lupinus albus HOM05D000090 ORTHO05D000083 4.4e-06 54.7 90 37.8
Rhsim03G0087400 Rhododendron simsii HOM05D000090 ORTHO05D000083 4.4e-06 54.7 91 38.5
Ah.01g001910 Amaranthus hybridus HOM05D000090 ORTHO05D000083 5.7e-06 54.3 85 42.4
Carub.0006s1301 Capsella rubella HOM05D000090 ORTHO05D000083 5.7e-06 54.3 87 40.2
ECA247G1703 Erigeron canadensis HOM05D000090 ORTHO05D000083 5.7e-06 54.3 86 43.0
Lj9A180T102 Lonicera japonica HOM05D000090 ORTHO05D000083 5.7e-06 54.3 88 42.0
MBI14_g36876_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D000083 5.7e-06 54.3 87 42.5
Nitab4.5_0001727g0010 Nicotiana tabacum HOM05D000090 ORTHO05D000083 5.7e-06 54.3 85 44.7
Oeu001769.1 Olea europaea HOM05D000090 ORTHO05D000083 5.7e-06 54.3 88 42.0
AL3G49610 Arabidopsis lyrata HOM05D000090 ORTHO05D000083 7.4e-06 53.9 90 42.2
ClCG05G026430 Citrullus lanatus HOM05D000090 ORTHO05D000083 7.4e-06 53.9 86 48.8
FvH4_6g17080 Fragaria vesca HOM05D000090 ORTHO05D000083 7.4e-06 53.9 92 41.3
FAN14G4915 Fragaria x ananassa HOM05D000090 ORTHO05D000083 7.4e-06 53.9 92 41.3
Nn003s41398 Nelumbo nucifera HOM05D000090 ORTHO05D000083 7.4e-06 53.9 91 42.9
Nn8g40265 Nelumbo nucifera HOM05D000090 ORTHO05D000083 7.4e-06 53.9 91 42.9
PGSC0003DMG400006908 Solanum tuberosum HOM05D000090 ORTHO05D000083 7.4e-06 53.9 89 40.4
GSVIVG01033698001 Vitis vinifera HOM05D000090 ORTHO05D000083 7.4e-06 53.9 89 41.6
HanXRQChr02g0037241 Helianthus annuus HOM05D000100 ORTHO05D010509 9.7e-06 53.5 86 41.9
Lsat_1_v5_gn_1_26721 Lactuca sativa HOM05D000090 ORTHO05D000083 9.7e-06 53.5 87 40.2
Psat3g123440 Pisum sativum HOM05D000090 ORTHO05D000083 9.7e-06 53.5 91 42.9


User provided reference genes

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